Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Download alignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| SS Seq | CCCCCCCCSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSCCCCCHHHHHHHHHHHCCCCCCCCCSSSSCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHHHCCCCCCCCCSSSSSCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCSSSSSSC MDRGSLLPFQLWCPRPFGTYSQNQPRPPSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEVPASQPAPLLSAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDPTKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVSAEQGGPAKGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVRIAFR |
1 | 5efvA | 0.08 | 0.08 | 3.25 | 0.52 | CEthreader | | LNFVEVRSADDIDKIDKVLYQMDIPMEYTSDTQPMQGITYDAGILYWYTGDSNTANPNYLQGFDIKTKELLFKRRIDIGGVNFQEAEGLDMYYDLETGRKALLIGVTIGPGNNRHHSIYSIGQRGVNQFLKNIAPQVSMTDSGGRVKPLPIQNPAYLSDITEVGHYYIYTQDTQNALDFPLPKAFRDAGWFLDVLPGHYNGALRQVLTRNSTGRNMLKFERVIDIFNKKNNGAWNFCPQNAGYKSITKLSDLKIVGLDFYITTE |
2 | 3gtdA | 0.07 | 0.06 | 2.60 | 0.53 | EigenThreader | | LAGEFEDNFPLVVWQTGSG--TQTNMNMNEVIASIANEELTGKKGGKFPVHPN-------------------DHVNKGQSSNDSFPTAMHIATVLATKQQVYLLAQGGTAVGTGIHDALVEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGENPTQVEALTMVCTQVMGNHVTVTIAGSSVNSFVTHCVKGL-----EPN-------IARINTLRDKSLMLVTVLNPHIGDNAAKIAKEAHKYGITLKEAAKKLNFL----SE |
3 | 2xd8A | 0.08 | 0.07 | 2.65 | 0.42 | FFAS-3D | | MANANQVAL----------GRSNLSTGTGYGGATDKYALYLKLFSGEMFKGFQHETIARDLVTKRTLKN-------------------------GKS---------LQFIYTGRMTSSFHPGTPILGNADKAPPVAEKTIVMDDLLISSAFVYDLDETLAHYELRGEISKKIGYALAIFRSITRGARSASPVSATNFVE-PGGTQIRVGSGTNESDAFTASALVNAFYDAAAAMDEKGVSSQGRCAVLNPRQYYALIQ------ |
4 | 4btgA3 | 0.09 | 0.09 | 3.32 | 0.94 | SPARKS-K | | VKDLNGSARGLTQAFAIGEL-KNQLSVGALQLPLQASMTSELLWEA-YVYRVGRTATYPFDANTPKELDPSARLRNTNGIDQRSNLALFIAYEVIFSDEELSIGQTSAIDHMGQPSHVVVYEDWQFAKEITAFTPVKLANNSNQRFLDVEPTLAPIGNTRGTVNSNGAEMSVVERDYYAAVMHYAVAHQGVAAEQGSLYLVWNVRTELRIPVGYNAIEGGSIRTPEPLEAIAYN-------KPIQPSEVLQAKVLDLANHTTSI |
5 | 6u1vA | 0.10 | 0.05 | 1.98 | 0.47 | CNFpred | | --------------------------------------------------------------------------------------RFLVVIARSA-PARYTAVTVPRD-----APGLRVDKRWDVIGMRASATYQVSFSDCRVPGDNALNGNGLRLLEIGLNA---RILIAASALGVARRIRDVCMEYGKTKSLKGAPLVKDGVFAGRLGQFEMQIDVM---ANQCLAAARAYDATAARPDA--------------------- |
6 | 1iduA | 0.07 | 0.05 | 2.18 | 0.67 | DEthreader | | HVGGPLTGPPLSAALGMHLLL--NNPGANISDAYALG-----R-------DPRGASQYPKFDDE--P-THPVVIFRQYHAPFYGKHFL-PYNVIAVTYKFVDCAGSWKEKWEEFPFPSGHFG---AIDMMISEENRD-QPYDPT--P-----IED----V-TRIV-RHFDSAWELMFENAISRIFHWRFD----AARDILI----------------FQNVEDIRYGVPLGIEIADEIFNNG--LKPTPPEIQP---------- |
7 | 2pffB | 0.09 | 0.09 | 3.34 | 0.84 | MapAlign | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL-- |
8 | 4k0mC | 0.15 | 0.10 | 3.32 | 0.67 | MUSTER | | FDETVEVHAKLGPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAA--------------------AAAAAAAAAAAA-----AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------------------------------- |
9 | 2npiA1 | 0.05 | 0.02 | 0.71 | 0.61 | HHsearch | | ---------------------------TGDNEWKLVPKGSDWQID------LKAEGKLIVK------------VNSGIVEFTELAVDDEYTF-QN---WKFPIYAVEETE-------LLWKCPDTNTITVKPNH-------T-------------------------------------------------------------------------------------------------------------------------- |
10 | 3qdfA | 0.11 | 0.08 | 2.90 | 0.48 | CEthreader | | AEHPFGTPNFTGRSWPLADVRLLAPILASKVVCVGKNYTPADPVIFLKPNTAIVG-------------PNVPIRLPANASPVHFEGELAIVIGRPCKDVILGYTIGNDVSARDQHDTFCPVGPWIVTDVDPADLELRTEVNGAVKQ---------------HARTSLMIHDVGAIVEWISAVMTLLPGDLILTGTPAGVGPIEDGDTVSITIEGIGTLTNPVVRKGK------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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