>PF18761 (244 residues) LRRFNLIMGFLHLIQGVLMIVLSNDTTYPIFTNYLTFNPESLSLVPDPKLFYELRFGPAV AAFLLLSAIAHFSLASFGYNWYVKNLKKGMNPVRFYEYALSSSLMIVLIGMLVGMWDLGA LILIFGINAMMNLFGIMMEYHNQYTEKTNWTSFIYGSIAGIIPWIVIVLYFLGSINSSDA KPPAFVYAIIPTIFVFFNIFAVNMYLQYKKVGKWADYLYGERVYIILSLVAKTLLAWQIF AGTL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | LRRFNLIMGFLHLIQGVLMIVLSNDTTYPIFTNYLTFNPESLSLVPDPKLFYELRFGPAVAAFLLLSAIAHFSLASFGYNWYVKNLKKGMNPVRFYEYALSSSLMIVLIGMLVGMWDLGALILIFGINAMMNLFGIMMEYHNQYTEKTNWTSFIYGSIAGIIPWIVIVLYFLGSINSSDAKPPAFVYAIIPTIFVFFNIFAVNMYLQYKKVGKWADYLYGERVYIILSLVAKTLLAWQIFAGTL | |||||||||||||||||||
1 | 1xioA | 0.09 | 0.08 | 2.95 | 1.81 | SPARKS-K | ESLLHWIYVAGMTIGALHFWSLSRNP------------RGVPQ----------------------YEYLVAMFIPIWSGLAYMAMAIDIAHYARYIDWMVTTPLLLLSLSWTAMQKDWTLIGFLMSTQIVVITSGLIADLS--ERDWVRYLWYICGVCAFLIILWGIWNPLRAKTRTQSSELANLYDKLVTYFTVLWIGYPIVWIIGPS-GFGWINQTIDTFLFCLLPFFSKVGFSFLDLHGLR | |||||||||||||
2 | 1xioA | 0.10 | 0.08 | 3.05 | 1.45 | FFAS-3D | -SLLHWIYVAGMTIGALHFWSLSRNPRGV-----------------------PQYEYLVAMFIPIWSGL-----------AYMAMAIDIAHYARYIDWMVTTPLLLLSLSWTAMQKDWTLIGFLMSTQIVVITSGLIADLS--ERDWVRYLWYICGVCAFLIILWGIWNPLRAKTRTQSSELANLYDKLVTYFTVLWIGYPIVWIIGPSGFGW-INQTIDTFLFCLLPFFSKVGFSFLDLHGL- | |||||||||||||
3 | 6gyhA | 0.13 | 0.11 | 3.97 | 1.06 | HHpred | -LVMYWVTFGLMAFSALAFAVMTFTR--P---------L-------NKR-----SHGYITLAIVTIAAIAYYAMAASGGKALVDGNLRDIYYARYIDWFFTTPLLLLDIILLTGIP-IGVTLWIVLADVAMIMLGLFGALSTN---SYRWGYYGVSCAFFFVVLWGLFFPGAKGARARGGQVPGLYFGLAGYLALLWFGYPIVWGLAE--GSDYISVTAEAASYAGLDIAAKVVFGWAVMLSH- | |||||||||||||
4 | 6gyhA | 0.14 | 0.13 | 4.31 | 1.51 | MUSTER | GLVMYWVTFGLMAFSALAFAVMTF-----------TRPLNKRS------------HGYITLAIVTIAAIAYYAMAASGGKALVSNPDGNLRDIRYIDWFFTTPLLLLDIILLTGI-PIGVTLWIVLADVAMIMLGLFGALS---TNSYRWGYYGVSCAFFFVVLWGLFFPGAKGARARGGQVPGLYFGLAGYLALLWFGYPIVWGLAE--GSDYISVTAEAASYAGLDIAAKVVFGWAVMLSH- | |||||||||||||
5 | 3rkoB | 0.08 | 0.07 | 2.63 | 1.28 | CNFpred | ---MLMWATLMLLGGAVGKSAQL-----PLQTWLADAM---------------AGPTPVSALIHAATMVTAGVYLIARTHGLFLMT------PEVLHLVGIVGAVTLLLAGFAAQTDIKRVLAYSTMSQIGYMFLALGVQAWD----AAIFHLMTHAFFKALLFLASGSVILACHHEQNI-IPLVYLCFLVGGAALSGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKE | |||||||||||||
6 | 3wt8A | 0.14 | 0.13 | 4.31 | 1.38 | HHsearch-2 | GTDAQWVVFAVMALAAIVFSIAVQFR------------PL------PLR-----LTYYVNIAICTIAATAYYAMAVNGGDNKPGADERQVIYARYIDWVFTTPLLLLDLVLLTNMPA-TMIAWIMGADIAMIAFGIIGAFTVG---SYKWFYFVVGCIMLAVLAWGMINPIFKEELQKHKEYTGAYTTLLIYLIVLWVIYPIVWGLGA--GGHIIGVDVEIIAMGILDLLAKPLYAIGVLITVE | |||||||||||||
7 | 6gyhA | 0.13 | 0.11 | 3.97 | 1.34 | Neff-PPAS | -LVMYWVTFGLMAFSALAFAVMTFTR-----------PLNK------------RSHGYITLAIVTIAAIAYYAMAASGGKALVSNPDGNLYYARYIDWFFTTPLLLLDIILLTGI-PIGVTLWIVLADVAMIMLGLFGALSTNS---YRWGYYGVSCAFFFVVLWGLFFPGAKGARARGGQVPGLYFGLAGYLALLWFGYPIVWGLAE--GSDYISVTAEAASYAGLDIAAKVVFGWAVMLSH- | |||||||||||||
8 | 3wt8A | 0.14 | 0.13 | 4.31 | 1.83 | HHsearch | GTDAQWVVFAVMALAAIVFSIAVQFR--P----------------LPLR-----LTYYVNIAICTIAATAYYAMAVNGGDNKPGADERQVIYARYIDWVFTTPLLLLDLVLLTNMPA-TMIAWIMGADIAMIAFGIIGAFTVG---SYKWFYFVVGCIMLAVLAWGMINPIFKEELQKHKEYTGAYTTLLIYLIVLWVIYPIVWGLGA--GGHIIGVDVEIIAMGILDLLAKPLYAIGVLITV- | |||||||||||||
9 | 1xioA | 0.11 | 0.09 | 3.28 | 1.02 | PROSPECTOR2 | MSLLHWIYVAGMTIGALHFWSLSRNPRGV------------------------PQYEYLVAMFIPIWSGLA----------YMAMAIDIAHYARYIDWMVTTPLLLLSLSWTAMQKDWTLIGFLMSTQIVVITSGLIADL--SERDWVRYLWYICGVCAFLIILWGIWNPLRAKTRTQSSELANLYDKLVTYFTVLWIGYPIVWIIGPSGFGWI-NQTIDTFLFCLLPFFSKVGFSFLDLHGLD | |||||||||||||
10 | 3ug9A | 0.10 | 0.07 | 2.72 | 0.85 | SAM | ---------------------------------------------------------YVATIEMIKFI-IEYFHEFDEPAVIYSSNGNKTVWLRYAEWLLTCPVILIHLSNLTGLANDKRTMGLLVSDIGTIVWGTTAALSK---GYVRVIFFLMGLCYGIYTFFNAAKVYIEAYHTVPKRCRQVVTGMAWLFFVSWGMFPILFILGPEGF-GVLSVYGSTVGHTIIDLMSKNCWGLLGH---- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |