>PF18754 (261 residues) RIILSRKGFDSSSGGCPSPILPDGRMVSLPIPDSRSKIRYRDLKLVDVNAGRLVSQLTRK KIIGSSGAHLDPDLSIGHLPRLLGWRPLLGQTGSAQGHLHKQGIEPDDIFLFFGLFRDAE IHNRRWRFVPGSKPRHIIWGWLQIDEILPVDSLDNDAYSWLNYHPHLHGEADKGNTLYVA RDYLSLPGIDKVPGSGIFDRFDPRLQLTQTGSEKPSQWQLPKWFFPGDRQPLSYHAKAGR WQQNKSHCLLSAVARGQEFVL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | RIILSRKGFDSSSGGCPSPILPDGRMVSLPIPDSRSKIRYRDLKLVDVNAGRLVSQLTRKKIIGSSGAHLDPDLSIGHLPRLLGWRPLLGQTGSAQGHLHKQGIEPDDIFLFFGLFRDAEIHNRRWRFVPGSKPRHIIWGWLQIDEILPVDSLDNDAYSWLNYHPHLHGEADKGNTLYVARDYLSLPGIDKVPGSGIFDRFDPRLQLTQTGSEKPSQWQLPKWFFPGDRQPLSYHAKAGRWQQNKSHCLLSAVARGQEFVL | |||||||||||||||||||
1 | 5mz9A | 0.15 | 0.13 | 4.49 | 0.72 | SPARKS-K | QIIFSGVGYDSSSSSSST---KDQALAWSTTTSLDSKTGYKDLVTNDTGLNGPINGSFTGPIKTAYPV---------KKDQKSTVKNSYGDEGIGVFDALNQEPSRTDQIFVYGIVSKVNWSNSGLKSIAPDGFANSIANFSVGLKAGID--PNP-----------VMSGKKANGAVVLTRGRLNFNPGNDS----LLSTTDNNIPISTPFTAAESAVDLTTF------KEVTYNQESGLWVTDNMGFSVITVSRGIELNQ | |||||||||||||
2 | 3g7sA3 | 0.12 | 0.08 | 3.00 | 0.47 | FFAS-3D | --------------------------------ELKYKIGFPSLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSE--FPESNFLEICEVTKKLASGISRKGVRKGEHVGV---------------CIPNSIDYVTIYALWRVAATVPINPYKSFELEHILNDSEAT-------TLVVHSLYENFKPVLEKTGVERVFVVGGEVNSLSEVDSGSEDFENVKVNPEEDVALIPY----------------TGGTTGPKGVL | |||||||||||||
3 | 2ar1A | 0.16 | 0.08 | 2.56 | 0.28 | HHpred | ---------------------------------------------HKFSIDDLAK------------------------QKTSPWD---GVRNAARNNMRA--MSVGDKVLFYHS----------------NTKEPGVAGLAEVVRLAYDDF-----TALDKTSEYFDPKATKEKMVDVKFVA-------------R---WDTVLTLHELKS-RRELQKMAL-FTQRR---LSVQPVASEYAY------------------ | |||||||||||||
4 | 5n8oA | 0.12 | 0.11 | 3.94 | 0.70 | MUSTER | QVLITDSGQRTGTGSALMAMKDAGVNTYR---WQGGEQRPATIISEPDRYARLAGDFAASVKAGEESVAQ-----------VSGVREQAILTQAIRSELKTQGVLGHPEVTMTALLRDMYRPGMVMEQWNPETRSHDRYVIDRVTASLTLRDAQGETQVVRISSLDSSWSLFRPEKMPVADERLRVTGKLRVSGGDRLASVSEDMTVVVPGRAEPASLPVSD--SPFTALKLENGWVETPGHSVSDSATVFASVTQMAMNA | |||||||||||||
5 | 5veoA | 0.13 | 0.06 | 2.00 | 0.80 | CNFpred | -----------------------INLGFLYWEEP--DDTGHDVGPDSPLMGSVISDVD-------------HKLG------------------YLIKMLKRAKLWNNVNLIVTSDHGMTQCSKRVIELDRY-KEHYTLIDHSPVAAILPKEGKFDEVYDALAGAH-------PNLTVYKKE-------------------------------------------------------------------------------- | |||||||||||||
6 | 2pffB | 0.16 | 0.15 | 4.82 | 0.67 | HHsearch-2 | ARIMAKRPFDKKS---NSALFRNAQLVAIDYFEELRYQTYGDLIFSAETLSELIRTTLDEKYLKGATGHSQGLVTAVAIAETDSWESFF------VSVRKAIT------VLFFIGVRCYEA------YPNTSLPP-SILEDLENNPMLSISNLTEQVQAGKQVEISLVN--GAKNLVVSGPPQAPSGLQSRIPFSEKFS--NRFLPVASP---FHSHLLVPASINKDLVKNVSFNAKDIQIDTDGSDCIIRLPVKWTQFKA | |||||||||||||
7 | 1maeH | 0.09 | 0.08 | 3.08 | 0.91 | Neff-PPAS | -----SILGHVNGGFLPNPVAHSGSEFAL------ASTSFSRIAKGKRTDYVEVFDPVTFLPIADI------ELPDAPRFDVGPYSWMNNADLLFFQFAAGPAVGLVVQ----GGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV--YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT | |||||||||||||
8 | 1vk1A1 | 0.11 | 0.04 | 1.37 | 0.42 | HHsearch | ------------------------------------------------------------------------------------WYPAFGDVN-VIERLKAEGLEV-------------IEDEKAE--EAEGEIAFALIGE----KSFAIPGGKSKVLDEMDQA-EI-------ELVYYGLKEDAKA---DM-EKGEID-Y----VF------------------------------------------IR---------- | |||||||||||||
9 | 3g7sA3 | 0.13 | 0.08 | 2.93 | 0.89 | SP3 | --------------------------------ELKYKIGFPSLYYPKISLADRIDAAA--EKFGEKTA-----IISAEPKFPSEFPESCEVTKKLASGISRKGVRKGEHVGVCI---------------PNSIDYVTIYALWRVATPVPINPYKSFELEHIL-------NDSEATTLVVHSLYENFKPVLEKTGV-------ERVF--VVGGEVNSL----SEVDSGSEDF-----ENVKVNPEEDVAL----------IP | |||||||||||||
10 | 4qn9A | 0.10 | 0.09 | 3.39 | 0.89 | PROSPECTOR2 | -----------------SKKGKDGRFVN-PWPTWKNPSIPNSSVPSSKEELDYFITNPEEAGVREAGLRVDPIFSSRASPSQYMGPKRFRRSPCSVIALNERFGNELRWFVPLGLLDWMQKCGCENVIELDWWEENCVPGHDKVTFVFTPSQHWC-------KRTLMDDNKVLWGSWSVLGPWNRAGDTGYCPAFEEIGKRFGPFDLGAYEPRWFMKYQHVDPWGTFALANEHYLEPPVKLNYGLNAEDFFVLKHGESRYL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |