>PF18163 (270 residues) LLHKLIGISISDSPDLARLGFSHFHLKRALVEISRHLLAQGASVAYGGDLRPDGFTQDLI EMVKAYNKQALELGEKIQNFLAWPLHLGQTVQFLAQHKNEITIRPIALPQELKQDFSIDE QKYLEPNSTVNQYIWSRCLTAMREQMAQQIDARIILGGKVVNYKGAFPGIAEEAALAISH HKPLFVLGAFGGCAKAVGEAMLGESPEVLTQAYQTAQSEDYAKMIQFYNQRANQGTSHKE INYTTLVETFQNTGFQGLNNGLTELENQNL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | LLHKLIGISISDSPDLARLGFSHFHLKRALVEISRHLLAQGASVAYGGDLRPDGFTQDLIEMVKAYNKQALELGEKIQNFLAWPLHLGQTVQFLAQHKNEITIRPIALPQELKQDFSIDEQKYLEPNSTVNQYIWSRCLTAMREQMAQQIDARIILGGKVVNYKGAFPGIAEEAALAISHHKPLFVLGAFGGCAKAVGEAMLGESPEVLTQAYQTAQSEDYAKMIQFYNQRANQGTSHKEINYTTLVETFQNTGFQGLNNGLTELENQNL | |||||||||||||||||||
1 | 1rcuA | 0.17 | 0.10 | 3.41 | 1.00 | HHsearch | ---KKVVVVGYSGPVNK---SPVSELRDICLELGRTLAKKGYLVFNGGRD---GV-ELVSQGVREAG-------GTVVGILPDEEAG--N-----PY---LSVAVKT-------------------GL----D-------FQRSVLLRNADVVVSIGGE--------IGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGLDNRRIVEI------------------------HQAWTVEEAVQIIEQI----------------- | |||||||||||||
2 | 3majA3 | 0.11 | 0.07 | 2.67 | 1.01 | SP3 | AVARPIAIVGSRN--------ASGAGLKFAGQLAADLGAAGFVVISGL---ARGIDQAAHRASLSSG---------TVAVLAGGHDKIYPAEHEDLLLDII------------------QTRGAAISEPLGHVPRGKDFPRRNRLISGASVGVAVI------EAAYRSGSLITARRAADQGREVFAVPG--------------------------SPLDPRAAGTNDLIKQGATLIT----SASDIVEAVASIL---------------- | |||||||||||||
3 | 1rcuA | 0.18 | 0.11 | 3.51 | 0.70 | SPARKS-K | ---KKVVVVGYSGPVNKSPV---SELRDICLELGRTLAKKGYLVFNGG---RDGV-ELVSQGVREA-------GGTVVGILP---------------------------DEEAGNPYLS--VAVKTGLDFQR----------SFVLLRNADVVVSIGGEI--------GTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGK-------------------------YLDNRRIVEIHTVEEAVQIIEQI----------------- | |||||||||||||
4 | 5ajtA | 0.16 | 0.12 | 3.95 | 0.94 | FFAS-3D | --RAKICVFCG-----SSGGASPAHMEAA-RQLGRVMAENNIDLVYGG--GTVGLMGEVARTVCSINGPES-----VHGIIPEALVRYERDGTYQTVKDNKQVV-------------PTETVYGRTTVVKDMHTRKKMMAE-EVISGGPGSGFIGLGG---------YGTMEEVFEVITHTKGICLLNVEG-------------------------YWDGILQWINMAAAQGFVQPGNETIDAEGAVRALREYKVSEATFKLEWGR---- | |||||||||||||
5 | 6co7A | 0.14 | 0.13 | 4.40 | 0.42 | HHpred | LEIPNLVISVTGGAKS--FVLKPRLREMFRRGLIKAAKTTGAWIITGGTN--TGVMKHVGEAVKEQQLMFGDTQVNVIGIATWGIVDK-----QSDLISEGKYALYSMEPTPGQGAMLDPNHFFLDDGTEGKYG---VEIGMRSRIEEAIMVLLVLEG--------GPNTVATMYELIKKKVPAVVIDGSGRAASVVGFAYNHTIKRNEDEVRAKVGAKGADKTYSMIKDDEKSLDGEISQDIDLLKALLKANR-------SSPVAQLNL | |||||||||||||
6 | 3be7A2 | 0.13 | 0.11 | 4.01 | 0.67 | MUSTER | L------IVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTVRNVGAANY------ADVSVRDAIERGVINGPTMLVALGITGGHCDHNLLPPEFNYSSE-GVVDSPWEARKKYGADGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHMKVAAHAHGKAAIKAGVASFIDETIDMAIKNN---TVLSMDIFVSDYILGEGAKAGIREESLNKERLVGKKQRENFMNAHRRGAIAGIFDHGDNAKQFAYMVEW-------GMTPLEAIQA | |||||||||||||
7 | 3quaA | 0.18 | 0.11 | 3.74 | 0.85 | CNFpred | --QWAVCVYCASG-------PTHPELLELAAEVGSSIAARGWTLVSGGGNV--SAMGAVAQAARAK-------GGHTVGVIPKALV-----HRELADVDAAELIVTD------------------------------TMRERKREMEHRSDAFIALPGG--------IGTLEEFFEAWTHDKPLILLDPFGH-YDGLLTWLRGLVPTGYV----------SQRAMDSLV---------VVDNVEAALEACAPE----------------- | |||||||||||||
8 | 1rcuA | 0.17 | 0.10 | 3.41 | 0.88 | HHsearch-2 | ---KKVVVVGYSGPVNK---SPVSELRDICLELGRTLAKKGYLVFNGGRD---GV-ELVSQGVREAG-------GTVVGILPDEEAG--N-----PY---LSVAVKT-------------------GLD-----------FQRSVLLRNADVVVSIGGE--------IGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGLDNRRIVEI------------------------HQAWTVEEAVQIIEQI----------------- | |||||||||||||
9 | 4rdyA | 0.07 | 0.07 | 2.73 | 0.77 | Neff-PPAS | -----LRLITEVVRWNWPHLYNEDEELKRAIDAVNAAKKYGVTIIDLTVAGIGCDVRFNEKVAKATG-------VNIIMGTGFYTYTEIPFYFKNRGIDSLVDAFVHDITIGIQGTNTRAAFVAVIDSSGLTKDVEMAIRAAAKAHIKTDVPIITHSF------VGNKSSLDLIRIFKEEGVDLARTVIGHVGDTDDISFIEQILREGAFGLDIYLPLDKRVKTAIELIKRGWIDVVRSTVPDWTMTLIFEKVIPRMRSEGITEEQINRV | |||||||||||||
10 | 3majA3 | 0.12 | 0.08 | 2.73 | 0.98 | HHsearch | AVARPIAIVGSRNASG--------AGLKFAGQLAADLGAAGFVVISGLAR---GIDQAAHRASLS---------SGTVAVLAGGHDKIYPAEHEDLLLQTRGAAISEPLGHV-----------------PRGK----DF-PRRNLISGASVGVAVIEAA------YRSGSLITARRAADQGREVFAVPGPAGTNDLIKQ----G---------------------------A-----TLITSASDIVEAVASIL---------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |