>PF17738 (282 residues) NGLEDMTFSSWEEFQSFLISWCEEQKIIFVIRSSVPLTNEDMSQDLIQSLKYSTVNLGCS SYTRKRCPATIHLKLGPDKDKLIIAKADLNHIHDSEIDLPSRFTRKPSLFVEFPIGKAAD ISDKFMDRNELTKLLRLHFPFGGESQLLDELESLFNSDPSAKVKLIYTEDKFIVKNIFLM TSAMQNLLQHFPETMYVDHIPALNQEFDLYSLLCQDESFSWRVCAHCIGRKETSETLRFL IQTVLQVCPNISTQVKYFTVSPEIRNPLDIQALLPNALVRYC |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | NGLEDMTFSSWEEFQSFLISWCEEQKIIFVIRSSVPLTNEDMSQDLIQSLKYSTVNLGCSSYTRKRCPATIHLKLGPDKDKLIIAKADLNHIHDSEIDLPSRFTRKPSLFVEFPIGKAADISDKFMDRNELTKLLRLHFPFGGESQLLDELESLFNSDPSAKVKLIYTEDKFIVKNIFLMTSAMQNLLQHFPETMYVDHIPALNQEFDLYSLLCQDESFSWRVCAHCIGRKETSETLRFLIQTVLQVCPNISTQVKYFTVSPEIRNPLDIQALLPNALVRYC | |||||||||||||||||||
1 | 4lmgA | 0.20 | 0.08 | 2.60 | 1.28 | FFAS-3D | ---PVPSFEDRHEIKPWLQKIFYPQGIDIVIERSDS----------------SKVTFKCR---SVACPFRIRAAYSVRLQKWNVVVMNNIHSHELR---------------------FDLITKTDDYKKFKENLRQ--KNDEKAIKTFDELEYKASLN---------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
2 | 4lmgA | 0.18 | 0.07 | 2.42 | 2.12 | HHsearch-2 | HLDPVPSFEDRHEIKPWLQKIFYPQGIDIVIERSDSS----------------KVTFKCR---SVACPFRIRAAYSVRLQKWNVVVMNNIHSHELRFDLIT----KTDD-Y---KKFKENLRQNDEKAIKTDELEYKASL----------------NLP--------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
3 | 4lmgA | 0.17 | 0.07 | 2.33 | 3.26 | HHsearch | HLDPVPSFEDRHEIKPWLQKIFYPQGIDIVIERSDSS----------------KVTFKCR---SVACPFRIRAAYSVRLQKWNVVVMNNIHSHELRFDLIT----KTDDY----KKFKENLR--------------Q----KNDEKAIKTFDELEYASLNL------P------------------------------------------------------------------------------------------------------------------ | |||||||||||||
4 | 4lmgA | 0.17 | 0.07 | 2.33 | 1.00 | SP3 | HLDPVPSFEDRHEIKPWLQKIFYPQGIDIVIERSDSSK-----------VTFKCR--------SVACPFRIRAAYSVRLQKWNVVVMNNIHSHELRFDLITK----------------------TDDYKKFKENLRQKNDEKAIKTFDELEYKASLNLP--------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
5 | 4lmgA | 0.21 | 0.06 | 1.81 | 1.03 | SAM | -LDPVPSFEDRHEIKPWLQKIFYPQGIDIVIERSDSSKV----------------TFKCR---SVACPFRIRAAYSVRLQKWNVVVMNNIHSHELRFD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 4lmgA | 0.17 | 0.07 | 2.33 | 0.86 | SPARKS-K | HLDPVPSFEDRHEIKPWLQKIFYPQGIDIVIERSDSS----------------KVTFKCRSV---ACPFRIRAAYSVRLQKWNVVVMNNIHSHELR---------------------FDLITKTDDYKKFKENLRQKND-----EKAIKTFDELEYKASLNLP----------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 5ereA2 | 0.07 | 0.04 | 1.48 | 0.69 | FFAS-3D | -----------------------------------------------------------------------------------------------------------EFQFPLLTQTAQELNAIFKDDRSVAAAAEQLSTTGLRGDRASAILETLFNENQYAYNCVTVDATGTI--VNVAPKQYQEQIIRLHQPVLSQAIKVEGFVGIDLEHPVFDQDGGFIGSVSVLTQPD---FFGSIISRKV-----HNFPVEIFVLQRD------------------- | |||||||||||||
8 | 4lmgA | 0.23 | 0.09 | 2.89 | 0.78 | HHpred | -LDPVPSFEDRHEIKPWLQKIFYPQGIDIVIERSDS----------------SKVTFKCR---SVACPFRIRAAYSVRLQKWNVVVMNNIHSHELRFDLI----TKTDDYKKF----KE----------NLRQ-----KNDEKAIKTFDELEYKAS------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
9 | 4lmgA | 0.18 | 0.07 | 2.42 | 0.74 | MUSTER | HLDPVPSFEDRHEIKPWLQKIFYPQGIDIVIERSDS----------------SKVTFKCR---SVACPFRIRAAYSVRLQKWNVVVMNNIHSHELRFDLITK--------TDDYKKFKENLRQKNDAIKTFDELEYKASLNLP------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 4lmgA | 0.22 | 0.09 | 2.68 | 0.88 | CNFpred | ------SFEDRHEIKPWLQKIFYPQGIDIVIERSDS----------------SKVTFKCRSV---ACPFRIRAAYSVRLQKWNVVVMNNIHSHELRFDLITKT----------------------DDYKKFKENLRQK----NDEKAIKTFDELEYKA---------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |