>PF17710 (295 residues) MRHSVARPTRLPRRLSPFWDPATCKNLEGGAGEVVRGRDPRRLRTSRSTEILGEDLAGPS AGAAARPAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRAAGG VLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSA LETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALP GAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVGNHPRDS |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | MRHSVARPTRLPRRLSPFWDPATCKNLEGGAGEVVRGRDPRRLRTSRSTEILGEDLAGPSAGAAARPAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGRRRALPGAADLRPKGARADDRRPLRAGRKLHLPEAARLPGNVGKSGEPHKAGEVGNHPRDS | |||||||||||||||||||
1 | 6em5q | 0.13 | 0.12 | 4.14 | 1.19 | SPARKS-K | KDICEYYTPFLAEKLFNLFSPAEAMEF----FEANEIARPITIRTNTL-KTRRRDLA------QTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYIASSFLPVIALDPHENERILDMGGKTTYISAMMKNTG------CVFANDANKSRTKSLIANIHRLGCTNT--IVCNYDAREFPKVIGGFDRILLDAPCSGGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVGAVELRKRPNLVDTGLAIGKEAFTSYRGKKFHPSVKLARYYPHTYNVDGFFVAKF | |||||||||||||
2 | 1maeH | 0.09 | 0.08 | 3.24 | 1.55 | Neff-PPAS | -------TNDEAPGADGRRSYINLPAHHSAIIQQ-WVLDAGSGSILGHVNGGFLPNPVAAALASTSFSRIAKGKRTTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD---QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQ---VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH | |||||||||||||
3 | 2nbiA1 | 0.10 | 0.10 | 3.65 | 1.56 | PROSPECTOR2 | -QPSDLNPSSQPSECADVLEEFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPPTMMPSPEPSSQPSDCGEVIEECPIDACFLPKSDSARPPDVLPFPNNIGCPSCCPFECSPDNPMFTPSPDGSPPNCSPTMLPSPSPSAVTVPPTR | |||||||||||||
4 | 4btgA | 0.12 | 0.11 | 3.95 | 1.10 | SPARKS-K | FSDEELSSTIIPWEVSPLRPINETTSYIGQTSAIDHMGQPSHVVVYEDWQFAKEITAF----------TPVKLANNSNQRFLDVEPGISDRMSATLAPIGNTFATAVYEAVSQRGTVNSNGAEMTLGFPSVVERDYALDRDPMVAIAALRTGIVDESLAAVMHYAVAHNAEQGSLYLVWNVRTELIPVGYNAIEGGSIRTP----EPLEAIAYNKPIQPSEVLQAKVL--DLANHTTSIHPWHEASTEFAYEDAYSVTIRNKRYEVKEFELLGL--GQRRERVRIL----KPTVA | |||||||||||||
5 | 1kvpA | 0.13 | 0.11 | 3.89 | 0.48 | FFAS-3D | ----LGTINPDTNKIPKFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTGMAPVTTKFRDVPNLSGTPLIFRDNKGRTIKTGQLGIGPVDAADLSNATSIDIMGLQAAYAHTDQERDYFMQRYRDVISSFGGKTS----------YDADNRPLLVMRSNLWASGYDVGTDQTSLGQF------------------SGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEIQYLNAKGALDPVLYGNLPPREISMKDVFRSGDSSK----- | |||||||||||||
6 | 5khaA | 0.12 | 0.04 | 1.54 | 0.30 | HHpred | --------------------------------------------------------------------------------------------------------------------------------------------------------GNIDSNTQKMIEQNQAKKQDADLIIFPELSVIGYPAEDLLLRPNLN----------KRMQKAFASEVKDI----VMVFGFVNQTEQRYNSAAVMKDG------QVLGVFNKHNLPNYGVQKGHQ------------------- | |||||||||||||
7 | 2atyA | 0.09 | 0.09 | 3.37 | 0.93 | MUSTER | ---DISCPPPILNRISYYSTVIRCSRLIGEKSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSACKTNFSMNGNKSVWCQANNMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLT-PKVTCVVVDISKDDPEVEVHTAQTQPREEQFNSTFRSVSEPIMHQDWLNGKENSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTMITDFFPEDIWNGQPAENYKNTQPIMNT | |||||||||||||
8 | 3ndrA | 0.18 | 0.04 | 1.22 | 0.40 | CNFpred | ------------------------------------------------------------------------------------------------------------------------VIVSDINAEGAKAAAASIGKKARAIAADISDPGS--VKALFAEIQALTGG-IDILVNNASIVPFV-------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 6mwqA | 0.20 | 0.17 | 5.44 | 0.55 | HHsearch-2 | DNHRIVAPGKG--ILAADESTGSIAKRLQSIGTENTEENRRFYRADDGGVILFHE---T-----------LYQKADDGRPFSKGGVVGIKV-DKGVVPLAGTNGETTQGLDFAKWRCVGEHTPSALAIRYASIC-QQNGIVPIVEPEILP-DG--DHDLKRCQYVTEKVLAYKALSHHIYLEGTLLKPNMVTPGH------ACTQKYTVPPAVTGSGGQS-----EEEASINLNAINKCP---------LLKPWALTFSYGRALQASALKAWGGNLKAAQEANSLACQGKYTPSG | |||||||||||||
10 | 4bmlA | 0.11 | 0.11 | 3.79 | 1.46 | Neff-PPAS | -VRYATALKLFSGEVSIFKGLVRSYDLRGGKSKQF----MFTGKLSAGYHTPGTPIVGDAGIKANEKTLVMDDLLVSSQFDEIFSQYSTRAEVSKQIGEALATHYDERIARVLAKASAEASPVTGEPGGFHVNIGAGNTNDAQAIVDGFFEDERSAPQEGRVAVLSPRQYYSLISSVDTNILNREIGNSQGDMNSGKGLYAGLYGQDLSSAAVTGENNDYQVDASALAGLIFHREAAGCIQSVAPTIQTTSGDF----NVQYQGDLIVGKLAMG--CGSLRTSVAGSFQAA---- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |