>PF17661 (255 residues) LKSLRQRESETRWDKESDEDESRHMQEDESQMSSRVKFRDSVKKLKQKSHVQTDFPSAEE EYNFFTFNFDPEPDNIKDKTKSKKKSESNQEEEEGEEQESIVSHQQEQTEDEMDEEDCLV NDREDLFIIDQMAHDFLVVKPADYKSYSERLQKEREILFTPSILTVPMSQKVPENMQPRY LEDEGLYTGERPIVSLSNQNILENRILTQEQGKRWFGDDGKLLALPSPIKQSSTRPPIFS LEEGIEPELETLYKK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | LKSLRQRESETRWDKESDEDESRHMQEDESQMSSRVKFRDSVKKLKQKSHVQTDFPSAEEEYNFFTFNFDPEPDNIKDKTKSKKKSESNQEEEEGEEQESIVSHQQEQTEDEMDEEDCLVNDREDLFIIDQMAHDFLVVKPADYKSYSERLQKEREILFTPSILTVPMSQKVPENMQPRYLEDEGLYTGERPIVSLSNQNILENRILTQEQGKRWFGDDGKLLALPSPIKQSSTRPPIFSLEEGIEPELETLYKK | |||||||||||||||||||
1 | 5wtjA1 | 0.13 | 0.12 | 4.25 | 0.99 | SPARKS-K | LK-ISDEEVSKALNKDKKNIITKINDNDIKYLPSFSKVLPEILNLYRNNPKNEPFDTIETELNALIYVLEDDLEENESKNKKTLGNIDEIDENIIENYYKNAQISASKGNNKAIKKYQKKVIECYIGYLRKNYEELFDFSDFKNIQEIKKQIKDINDNKTYERITVKTSDKIVINDDFEYIISIFALLN-----SNAVINKIRNRFFATSVNT---SEYQNIIDILDEIQECITENKKEIEKDFDDFKIQTKKEI | |||||||||||||
2 | 5uz9A | 0.13 | 0.11 | 3.97 | 0.44 | FFAS-3D | ---IQERLQGK--LDKLQPDEDDKRQTLLATHRREAWLADAARRVGQ--------------LQLVTHTLKIHPDARGSNLHSLPQAPGQPGLAGSHELGDRLVSDVVGNAAALDVFKFLSLQYQGKNLLNWLTEDSAEALQALSDNAEQAREWRQAFIGITTVKGAPASHSLAKQL--YFPLPGSGYHLLAPLFPTSLVHHVHALLREAR-----FGDAAKAATKPQNISQLPSLPPNWQRQNNAPMRHSSVFEH | |||||||||||||
3 | 3rfyA | 0.18 | 0.15 | 4.84 | 0.33 | HHpred | ---IKDPEALLRYALPIDNKAIREVQKPLEDITLVKALDSVERNVRQKSIIVAGFAESDHGIEKLEAGMQDMLKIVEDR---KRDAVPKQLKYVGGIEEEVPEEYRKIKIVLDGYNAPV------------TAGNFVDVERHFYDGMEIQREGPAEGFIDPSTRTVPLEIMVTGEKTPFYLEELGLY-KAQVVIPFN--------------------AFGTMMAREENDSGSSQV-FWLLKESELTP-------- | |||||||||||||
4 | 5cwpA | 0.12 | 0.11 | 3.85 | 0.70 | MUSTER | MSSDEEEELIERAKEAAERAQEAAERTDPRVRELARELKRLAQEAAEEVKRDPSSSDVNEALKLIV-------EAIEAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRNPSSSDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELARELV----RLAVEAAEEVQRNPSSEEVNE----ALKK--IVKAIQEAVESLREAEESGDP---EKRE--KARERVREAVER--AEEVQRDPSGWLE----- | |||||||||||||
5 | 4g7hF | 0.15 | 0.08 | 2.77 | 0.55 | CNFpred | -------------------------------VETINKLSRTARQLQQEL---GREPTYEEIAEAMGPGWDAKRVEETLKIAQEPSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSK--------------------LSEREAMVLKLRK-------------GREHTLEEVGA----FFGVTRERIRQIENKALRKL--------------------------------------------- | |||||||||||||
6 | 2pffB | 0.18 | 0.15 | 4.73 | 0.36 | HHsearch-2 | VSSLVEPSKVGQFDQVLNLDIAAKLQENTTLVKTKELIKNYITLIRTTLDAEKVFTQGLN-----ILEWLENPSNTPDK-------------------------------------DYLLISCPLIGVIQLAHRSYLKVATDSWESFFVSVRKAITVLFYPNTSLPPISLENNEGVPSPML-----SISNLTQEQVQDYVNKTNSHLPAGKAKAPSGLDQSRIPFSEKLKFSNRFLPVASPSHLLVPASDLINKK | |||||||||||||
7 | 2tmaA | 0.10 | 0.10 | 3.75 | 1.78 | Neff-PPAS | MDAIKKKMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDL-ERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSTKLEKSIDDLEDE | |||||||||||||
8 | 3tzgA | 0.19 | 0.09 | 2.79 | 0.57 | HHsearch | -------------------------------------------------------------DTYVTKVT---------------D----------------LTGEEEQVKIIKYGDTPVRYEGDQITIVGEEVYEADKQTVYDYKG---------DTIFINSD-----------------------YRAT-----------SDYRFLKKVQGKYVFDQLGRLKEVTVFTDSVSSCHTYYNYDNNINYNLQA-YV- | |||||||||||||
9 | 6fmlG | 0.07 | 0.07 | 2.77 | 0.74 | SP3 | EGTNVALGYSTRSLVEYRLPRLIWCDGGRLDKPGPGNLVAGFRSKYLNHMMNIWTPENIRSSLEGIENFTWLRFVDTSLQEAYRASHTDVFARAVDLASKQNRLGHMQIVYDEPEDKKWTPVHALFQICERENPKAVAEITTE-GVLRDLMNIARVKYRELGLCRLEKAARPRASAPPIEV------VCDSRSAVIERENIMFHPAMRKALFGPTPSEIKEASFGPRPVTLYPPRALLPAPDHDKQRFTNITVPS | |||||||||||||
10 | 1iu4a | 0.08 | 0.08 | 3.10 | 0.84 | PROSPECTOR2 | DSDDRVTPPAEPLDRMPDPY----RPSYGRAETVVNNYIRKWQQVYSHRDGRKQQMTEEQREWLSYGCVGQYPTNRLAFASFDEDRFKNELKNGRPRSGETRAEFEGRVAKESFDEEKGFQRAREVASVMNRALENAHDESAYLDNLKKELANGNDALEDARSPFYSALRNTPSFKERNGGNHDPFWSGQDRSSSADKRKYGDPDAFRPAPGTGLVDMSRDRNIPRSPTSPGEGAQTEADADKNTAPDKVKQGWP | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |