>PF17419 (291 residues) MWIPYGLLGPLKAESAPETVRNSAEDTNEREFLVGFFVRNPVTQVWEVDILLNNGTHSET LNFHGRPAVMNLFPNDAGKLDEILYRIEACSAQQAVDACYAHVTTQLASWALRLGRGMAV AGWRVADLKHETRWRCVPFRPSALELKQPTLDQVPDTHRHLLHLYGEVRNATSPAWRLLN AMTILRAWRDRAEPFGSTDQRASEVGQSRREHLVTFETLMHSGAGSSASDLRDKPLAELI QRLEPVCRKVIRALEGERDAYSVPTRAEAAQLAEFANLADACAREVLTGEL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | MWIPYGLLGPLKAESAPETVRNSAEDTNEREFLVGFFVRNPVTQVWEVDILLNNGTHSETLNFHGRPAVMNLFPNDAGKLDEILYRIEACSAQQAVDACYAHVTTQLASWALRLGRGMAVAGWRVADLKHETRWRCVPFRPSALELKQPTLDQVPDTHRHLLHLYGEVRNATSPAWRLLNAMTILRAWRDRAEPFGSTDQRASEVGQSRREHLVTFETLMHSGAGSSASDLRDKPLAELIQRLEPVCRKVIRALEGERDAYSVPTRAEAAQLAEFANLADACAREVLTGEL | |||||||||||||||||||
1 | 5cqcA1 | 0.09 | 0.08 | 2.85 | 0.67 | SPARKS-K | --------SIYPPETS---WEVNKGMNSSRLHKLYSLFFD-KSSAFYLDDVSVLLTGAYGFQSKKNDQQIFLFRPDSDYV--AGYHVDAKS--DAGDKLDRRLSEISEFCSKATQPATFILPFVEMPTVQHQVLLTISYDPKSKQGRDTYSESLSS-------------------------------YFKGKYRTTCDTQSIEKAIKSTDFTLGKFTRAAYNT--------EGNCGSYTFRTIKEVISSSAQG-TTSNSYLTSQHVQDIESCIKYRNLGVVDIESALTEGK | |||||||||||||
2 | 3c18A | 0.12 | 0.10 | 3.52 | 0.72 | FFAS-3D | ------------EQATRTIYSEYAAYPE----TQGIIAVDSLTDQFDVLLLVSVEWTVKHYRLNTLRVSLHLVH-----------------EQVLSRWLILNANRRAVHWVSE--------GTIIFERNDYLT----DLKKQLRNFPETERCLQSLSFAKLLRRFQDGRDAYTHVHHALHHLARLSVLEKGAHPEVVVWEQARLDDPD--VYKLYEQLLLSEETLEQRIHL---ALIGLQSKVLSGGKYLFEVRERDRPWTHELEESRLTELKDLGSLVDFFIRKGLIRIS | |||||||||||||
3 | 4db3A | 0.12 | 0.08 | 2.92 | 0.28 | HHpred | ------------------------------------------------NLYFQSNAMYYGFDVGGTKIEFGAFN-EKLEVATERVPTPTDDYPLLLETIAGLVAKYDQEFACEGKIGLGLPGM--EDADDATVLTV-NVP--AA--K---GKP-------LRADLEAKIGRNDANCFAL-----SEAWDEEQDA---PSVMGLILGTGFKGNNVAGEMRLPDGKKGCLDSYL--SGRGFELLYAHYYIDIIKANA-----AGDE--KAAEHVERFMELAICFGN------- | |||||||||||||
4 | 2is6A | 0.16 | 0.15 | 5.02 | 0.66 | MUSTER | MIVDYGWRG-----AQVENIQRFLNDFPGAETIR----QNYRSTSNILSAANRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNALAECASNAQSRVLEEALLQASMPYRIYGQEIKDALSYLRLIVNRNDDAAFEVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDLM---------PLQAFLSHAALEAGEGQADTW | |||||||||||||
5 | 5ol2C | 0.10 | 0.06 | 2.32 | 0.60 | CNFpred | -----------------------------DEYILNGSKIFITN-AIAGDIYVV-----MAMTD-NKGISAFIVEKG-----TPGFSFGVKEKKMGIRGS--------------ATSELIFEDCRIPKE-----NLLGK------------EGQGFKIAMSTLDGGRIGIA----AQALGLAQGALDETVKYVKERVQFGRPLSKFQNT------------------------QFQLADMEVKVQAARHLVYQAAINKDLG--PYGVEAAMAKLFAAETAMEVTTKAVQLHG | |||||||||||||
6 | 1vt4I3 | 0.09 | 0.04 | 1.59 | 0.69 | HHsearch-2 | --------------------------------------------------------------------------------------------------EYALHRSIVDH------------------------YNIPKTFDSDDLI---PPY-LDQYFYSHIGHHLK---NIEHPERMTLF----------RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP-------KYERLVNAILDPKIEENLIC--S---KYTDLLRIALMAEDEAIFEEA | |||||||||||||
7 | 4ci6B2 | 0.09 | 0.09 | 3.24 | 0.79 | Neff-PPAS | -------ITPYYLRELSDLLRTHLSSAATKQLDMGVVLSDLDTMLVALDKAEREGG--------VDKDQLKSFNSLILKTYSVIGAYILSIVEPSLQRIQKHLHSFSDIGSLMRAHKHLETLLEVLVTLSQQGQ----PVSSETYSFLNRLAEAKVTLSQQLNTLQQQQES-AKAQLSILINRSGSWADVARQSLQRFDSTRPVVKFGTEQYTAIHRQMMAAHAAITLQEVSE--FTDDMRNFTADSIPLLIQLG-RSSLMDEHLVEQREKLRELTTIAERLNRLEREWM- | |||||||||||||
8 | 4db3A1 | 0.10 | 0.04 | 1.40 | 0.40 | HHsearch | ------------------------------------------------NLYFQSNAMYYGFDVGGTKIEFGAFNEKLERVATERVPTPTDDYPLLLETIAGLVAKYDQEFACEGKIGLGLPG--MEDADDATVL-T-VNVP---AAK-----GK-----PLRADLEAKIGRS--VKI------------------------------------------------------------------------------------------------------------------ | |||||||||||||
9 | 2h7oA | 0.10 | 0.09 | 3.31 | 0.60 | SP3 | -------------RITPKKLRELSD-------LLRTHLSSAATKQLDMGGVLSDLDTMLVALDKAEREV------DKDQLKSFNSLILKTEDYVKGNFMLSIVEPSLQRIQKHLDQTHSFSDIGSLVRAHKHLETLLEVLVTLSQPVSSETYGFLNRLAEAKITLSQQLNT--LQQQQESAKAQLSILINRSGSWADVARQSLQRTRPVVKFGTEQYTAIHRQMMAAHAAITLQEVSEFTDDMRNFTVDSIPLLIQLGRSSLMDEVEQREKLRELTTIAERLNRLEREW-- | |||||||||||||
10 | 3h2gA | 0.06 | 0.05 | 2.47 | 0.89 | PROSPECTOR2 | PARGTLLTSNFLTSYTRDAISAMLASPEQRVAEFTYATIGVEGEPATASGVLERCSGPYPLALRAQEQAKEIRDANYAYHPYLHSASEASATIDAMRAARSVLQHLQREIEAHLSKEFHLVASAPISGPYALEQTFLDSWSG--SNAVGENTFGILLGSYAIVAMQHTYKNIYLEPGQVFQDPWAAKVEPLFPGKQSLTDMFL---NDTLPSIDKVKSYFQPGFYSDFPSNPANPFRQDLARNNKNAQTAIASFQQRGSNQGTGNASDNSHMLTKESCIVVVRDQLLDKQR | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |