>PF17410 (267 residues) YNRSLIPNNTQRTTIKSRLLAQTQKRNPHYHNDPELKEIIEKLNEESIKKYQQTHDPYKQ LKEVVEKNGTKYTDGNDAEPMSTTEKDLLETYEEIFGKENHMLKSGMYPNDDEKSSTCEC TDTNTKLARTKGKDKYLENLKERCKGGIGFCSVGSVLLTLVGLIAAKAAATKHFVDIQAC LSHMAMFKLFSVQALGEAIKAGGATCIKAAGDIAGTAAPAAMTTFPPYGIAALVLLILAV VLIILYIWLYRRRKKSWKHECKKHLCR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | YNRSLIPNNTQRTTIKSRLLAQTQKRNPHYHNDPELKEIIEKLNEESIKKYQQTHDPYKQLKEVVEKNGTKYTDGNDAEPMSTTEKDLLETYEEIFGKENHMLKSGMYPNDDEKSSTCECTDTNTKLARTKGKDKYLENLKERCKGGIGFCSVGSVLLTLVGLIAAKAAATKHFVDIQACLSHMAMFKLFSVQALGEAIKAGGATCIKAAGDIAGTAAPAAMTTFPPYGIAALVLLILAVVLIILYIWLYRRRKKSWKHECKKHLCR | |||||||||||||||||||
1 | 5cwpA | 0.14 | 0.10 | 3.56 | 0.70 | SPARKS-K | ---------------------------------------MSSDEEEARELIERAKEAAERAQEAAERTGDP-----RVRELARELKRLAQEAAEEVKRDP----------------------------SSSDVNEALKLIVEAIEAAVRALEAAERTLARELVRLAVEAAEEVQRDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQNPVNEALKKIVKAIQEAVESLREAEPEKREKARERVREAVER | |||||||||||||
2 | 4n6hA | 0.17 | 0.13 | 4.33 | 0.91 | FFAS-3D | ----------------------------------DLEDNWETLN-DNLKVIEKADN-AAQVKDALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLA----NEGKVKEAQAAAEQLKTTRNAYIQKYLGARSASSLALAIAITALYSAVCAVGLLGNVLVMFGIVRATNIYIFNLALADALATSTLPFQSAKYGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHKAKLINICIWVLA---------------- | |||||||||||||
3 | 5uqeA | 0.17 | 0.14 | 4.70 | 0.42 | HHpred | FY-TI-AEG-QEKIPVHKFITALKSTGLR-TSDPRLKECMDMLRLTL----QTTSDDKDLFKKCVQSNIVAFRRKLVIPDFMSFTSHIDELYESAKKQ-----SGGKVPQFSDLWGVSVCGDTKAIAVNDLGTEYVHRYV-GKEPSGLRFNKLFGAIVVLIKVNAEKFYVMQFGDRNFAIGYYLKEKKCFPETDMVGILDFYFQLCSVTCESASVMAATLANGGFCPITGPEAVRNTLSLMHS------------------------ | |||||||||||||
4 | 5yz0A | 0.12 | 0.12 | 4.12 | 0.75 | MUSTER | FPFEAEAYRNIEPVYLNMLLEKLEDGVLMRLKSDLLKAALCHLLQYFLKFVPAGYESALQVRKVYVRNICKALL-DVLGIEVDAEYLLGPLYAALKMESMEIIEEIQCQTQQENLSS----NSDGISPKRRRLSSSLNPSKRAPKQTEEIKHVDMNQKSAESLQISLEYSGLKNPVIEMLEGIAVVLQLTALCTVHCSHQNMNCRTFKDCQHKSKKKPSVVITWMSSLLESVQKLDLIDKVVKIYDALIYMQVNSSFEDHILEDLCG | |||||||||||||
5 | 6c3oE | 0.12 | 0.09 | 3.34 | 0.77 | CNFpred | ---------------HRSLLNRIILAPMRFFETTPLGSILNRFSSDCNTIDQHIPSTLECLSRSTL-----------------LCVSALAVISYVTPVFLVALLPL----------AIVCYFIQKYFRVA---SRDLQQLDDTT-----QLPLLSHFAETVEGLTTIRAFRYEARFQQKLLEYTDSNNIASLFLTAANRWLEVRMEYIGACVVLIAAVTSISNSL-SAGLVGLGLTYALMVSNYLNWMVRNLADMELQLGAVKRIHG | |||||||||||||
6 | 2pffB | 0.17 | 0.15 | 4.93 | 0.55 | HHsearch-2 | EHVLLVPT--ASFFIASQLQEQFNKILPEPTTPAELGKFLGYVSSVLLTEFENCYLEGNDIHALAAKL----LQENDT--TLVKTKELIKNYITPFDKKSSALFRAVGEGNAQLTYFEELRDLYGDLIKAETLSELIDAEKV-FTQGLYLLSIPIPLIGVIQLAHYVVTAKLL---------------GFTPGELRSYLKGAT-----GHSQGLVTAV--AIAETDSWSFFVSVRKAITVLFFIGVRSLENNVQD-YVNKTNSHLPA | |||||||||||||
7 | 5cwpA | 0.15 | 0.12 | 4.01 | 0.89 | Neff-PPAS | ---------------------------------------MSSDEEEARELIERAKEAAERAQEAAERTG-----DPRVRELARELKRLAQEAAEEVKRD----------------PSSSDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRNPSSSDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRPSSEEVNEALKKIVKAIQEAVESLREAEESGDPEKREKARE | |||||||||||||
8 | 2k1lA | 0.21 | 0.03 | 0.95 | 0.39 | HHsearch | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SPPVSRGLTGGEIVAVIF------------GLLL--GA--ALL-LGILVFRSRRA------------ | |||||||||||||
9 | 5mlzA | 0.14 | 0.13 | 4.34 | 0.85 | SP3 | YNERNLEE------LFSRIDNALQGLN---------YEIVDRT-WEKAQELSSKYEVIPKLIEAIKNGGSRYVKGGKVENWPFYRKLISKGAIMVGRIALPKIRDIKDPVSEGVELNPIGFKILMEILIKKTIFEYLRHIYRLMKWGLSGILVNEGFLWLFVNLGIPKEIAVIPAVELSILNNFFWNDIWTFKDIRRGSIFSRLLKFHIAALSGAVVNFIVYWILLFLGIHYLIANLVGIVLSFGVRYVINRHVT-WAT-------- | |||||||||||||
10 | 5cwmA | 0.14 | 0.11 | 3.83 | 0.96 | PROSPECTOR2 | DPEDELKRVEKLVKEAEELLRQAKE-----KGSEEDLEKALRTAEEAARE-------AKKVLEQAEKEGD-----------PEVALRAVELVVRVA-------------------------ELLLRIAKESGSEEALERALRV------AEEAARLAKRVLELAEKQGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKRVAELLERIARVREEARELQERVKELRER | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |