>PF17349 (286 residues) VGIVWLTTILIFAVHPLTKRWTNSYLAFWIPWGILTTVLSLVFRFIPDWIEHISNWATNG YNGIDSFDLTRIFLLDACPMICVLNMFACFIPNRKFGQAMAPISIFAALLTLTTFIPGSE DVFSLKFLFTGPDRENRGFFLIHFLNLITSCVFLLSGPRMTWRKFFTRTNLFVFSYLGYV AIMIAIFNGKLNQNATGLVPGDWLPGGEYSFLGKIIGLGFPLDPIIAFVFCYLGLMIITF IAIVLTRMKPYNVPGIVNDRDWWWQYYKIGHEYLCPLPPVKNKKKK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | VGIVWLTTILIFAVHPLTKRWTNSYLAFWIPWGILTTVLSLVFRFIPDWIEHISNWATNGYNGIDSFDLTRIFLLDACPMICVLNMFACFIPNRKFGQAMAPISIFAALLTLTTFIPGSEDVFSLKFLFTGPDRENRGFFLIHFLNLITSCVFLLSGPRMTWRKFFTRTNLFVFSYLGYVAIMIAIFNGKLNQNATGLVPGDWLPGGEYSFLGKIIGLGFPLDPIIAFVFCYLGLMIITFIAIVLTRMKPYNVPGIVNDRDWWWQYYKIGHEYLCPLPPVKNKKKK | |||||||||||||||||||
1 | 3rkoB | 0.09 | 0.08 | 3.03 | 1.36 | CNFpred | --LMWATLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTH---GLFLMTPEVLHLVGIVGAVTLLLAGFAALV-QTDIKRVLAYSTMSQIGYMFLALGV-----QAWDAAIFHL---MTHAFFKALLFLASGSVILACHHEQNIFKMGGSIPLVYLCFLVGGAALSALP-----LVTAGFF-------SKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKE-QIHAHAVKGVTHSLPLIVLLILS------------ | |||||||||||||
2 | 6ftg51 | 0.11 | 0.11 | 3.90 | 1.02 | PROSPECTOR2 | MTKLMITSAAIYHVLHFFHDIRNVCLAPLFSSFTTIVTYHLTKELKDAGAGLLGYISRSVAGSYDNEGIAIFCMLFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQISFVGF---------QPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTVGALLMLIIASVSEHQPTTWSSYYFDLQLLVFMNLSDARIFIIMYGVTSMCILSGIGVSQVLSTYMKNLDIEVASGMTYTFHSTWVTSEAYSSPSIVLSARGG | |||||||||||||
3 | 4zwjA | 0.08 | 0.07 | 2.86 | 0.83 | SPARKS-K | AAYMFLLIVLGFPINFLTLYVTVQHPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPP--LAGW---SRYIPEGLQCSCGIDY-------------YTLKPEVMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES------------------ATTQKAEKEVTRMVIIYVIAFLICWVPYASVAFYIFTHQGSCFGPIFAFFAKSAAIYNPVIYIMMNKQFRNCML | |||||||||||||
4 | 5an8A | 0.11 | 0.09 | 3.40 | 0.95 | FFAS-3D | -----LNKLLQAKWDRLIPRFCFNFLCYLVYMLIFTAVALILLGGVYLLLGQLWYFWRRRLFIWISFMDSYFEILFLLQALLTVLSQVLCFLAIEWYLPLLVSSLVLGWLNLLYYTRGFQHT---------------GIYSVMIQKVIL-------------RDLLRFLLVYLVFLFGFAVALVSLSREPPYRSTIGMGELAFQEQLRFRGVVLLL-----------LLAYVLLTYVLLLNMLIALMSETVNSVATDSWSIWKLQKAISVLEMENGYWWCRRKKQR | |||||||||||||
5 | 6bbjA | 0.15 | 0.13 | 4.24 | 0.29 | HHpred | ---------EMLAVEPI-NELLRDKWQKFGASVVSYLIAMIIFTLI-----AYYRPMDGTPPY--PYRTTMDYMRLAGEIVTLLTGVVFFITNKDLFMLDGSLLYFISVLVIITALYL-----------VGIE--SY----LAVMVLVLGWLYFTRGLLTTYSIMLQKLFRFLLVYLLFMIGYASAL--VSLLNPCR----DSSTGGDLEMIN---SAKYPAVFIILL-VTYIILTFVLLLNM-LIALMGETVGQVESKQIWKLQWATTILDIERSFPVCMRKAFR | |||||||||||||
6 | 4lz6A1 | 0.10 | 0.09 | 3.49 | 0.82 | MUSTER | MIGMFVMALYNVVDTIFISYAIEGVAGVTIAFPIMMIMMSMAGALGIGGASVISRRLGERRGEEANQVFGNILTVILVLSVIGFISAFTLLGTSVTQGYATDYLFPILLGSIFFFFA-----FAANNIIRSEGNATFAMVTMIVPAVLNILLDVLFIFGLNM--VLGASIATVIAQASVTGLVLRYFLTGKSTLS--LHWSDLRMKG--SVIKEVCLV---LPAFVQQSSASLMMIAINSMLLRFGSDFYVGVFGLVQRIMMFVMMPMMGIMQ---QPIVYNYGAK | |||||||||||||
7 | 3rkoC | 0.11 | 0.09 | 3.39 | 1.32 | CNFpred | VVLTGLLGVLAVLCSWK-YQGFFHLNLMWILGGVIGVFLAIDMFLFF-MYFLIALWGHKASDGKTRITAATKFFIQASGLVMLIAILALVFWTFNYEEL-LMLGFFIAFAVKMPVVPL---HGWLPDAHSQA--PTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYGAWMAFAQ-TDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERI------------------------------------ | |||||||||||||
8 | 1vt4I3 | 0.12 | 0.06 | 2.12 | 0.98 | HHsearch-2 | -------------------------------------------------------------------------------------------------EYALHRSIVDH-YNIP-KTFDSD------------D-LIPPYLDQYFYSHIGHHL--KNIEHPER------MTLFRMVFLDF-RFLEQKI--RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKRLVNAI---------LDFLPKIEE----NLICSKYTDLLRIALMAEDEAIFEE---AHKQVQRG | |||||||||||||
9 | 6i1rA | 0.12 | 0.12 | 4.09 | 0.98 | Neff-PPAS | YLVAALLTILTSSQGILTTLSQSNYDYATIPFLAELFKLSVSGFFLWKECRTSPSVRMTKFATLTYVDPSTYQIMGNLKIVTTGILFRLVLKRKSNIQWMAIVLLAVGTTTSQVKGCGDSPCDS------LFSAPLEGYLLGILSACLSALAGVYTEYNDSLYWQNVQLYTFGVIFNMGWLIYGDFKAGFELGPWWQRLFNGY--SITTWMVVFNLGSTGLLVSWLMKYSDNIVKVYSTSMAMLLTMVLSIYLFSVKATIQLFLGIIICIISLQMYFMPVHMLIEL | |||||||||||||
10 | 3j5pB2 | 0.14 | 0.06 | 2.16 | 0.50 | HHsearch | --------------------------------------------------------------------------------FQQMGIYAVMIEKRDLCRFMFVYLVFLFGTAVVTLIEDGK---------------------------------------YN--SLYS-T--CLELF-------KFTI---------GMGDLEFTEN-----------YDFKAVFI-ILLLAYVILTYILLLNMIALMGETVNKIAQESKNIWKLQRAITILDTEKSFLKCMRKAG- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |