>PF17236 (288 residues) DLTDVIYNIAPTETPFLSMCGTTEATSTKHEWQTDDLAPAANNKQVEGDDAAAAAASPTV RVDNQTQISSKTVSVSGTQDAVSSAGRKKELAYQVSKRGKEIKRDMEFALTQNTTAIAGD SATARQLRGLEGWIATNNSLGATGVAPNPINNTAPTDGTQRAFTESLLKDVLQKCWNNGG DPDVIMVGGTQKQVFSTFDGGATKQTDSKDKKVVATVDIYVSDFGTLKVVPNRFQRARTA FALQSDMWEVAYLRRFKTEPLAKTGDSEKRMLLAEYTLKAKNEKSSGA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | DLTDVIYNIAPTETPFLSMCGTTEATSTKHEWQTDDLAPAANNKQVEGDDAAAAAASPTVRVDNQTQISSKTVSVSGTQDAVSSAGRKKELAYQVSKRGKEIKRDMEFALTQNTTAIAGDSATARQLRGLEGWIATNNSLGATGVAPNPINNTAPTDGTQRAFTESLLKDVLQKCWNNGGDPDVIMVGGTQKQVFSTFDGGATKQTDSKDKKVVATVDIYVSDFGTLKVVPNRFQRARTAFALQSDMWEVAYLRRFKTEPLAKTGDSEKRMLLAEYTLKAKNEKSSGA | |||||||||||||||||||
1 | 5liiP | 0.13 | 0.12 | 4.31 | 1.39 | SPARKS-K | DDQITMLTWTNEDLIFYRDISRRPAQSTVVKYDQYLHGNVGSRFVKEIGV-APVSDPNIRQKTVSMKYVSDTKNMSIASGLVN--NIADPSQILTEDAIAVVAKTIEWASFYGDASLTSEVE---------------GEGLEFDGLAKLIDKNNVINAKGNQLTEKHLNEAAVRIGKGFGTATDAYMPIGVHADFVNSILGRQMQDNSGNVSINVNVSIYRQGKEIVFVDKNETLPTADVFVGEMQVVHLFELLPMMKLPLAQINASITFAVLWYGALALRAPKKWAR | |||||||||||||
2 | 5liiP | 0.13 | 0.12 | 4.22 | 1.34 | FFAS-3D | ILDDQITMLTWTNEDFYRDISRRPAQSTVVKYDQYLRNVGHSRFVKEIGVAPVSDPN-IRQKTVSMKYVSDTKNMSIASGLVNNIA--DPSQILTEDAIAVVAKTIEWASFYGDASLTSEV---------------EGEGLEFDGLAKLIDKNNVINAKGNQLTEKHLNEAAVRIGKGFGTATDAYMPIGVHADFVNSILGRQMQLNSGNVNTGYSVNGFYSSRGFIKLHGSTVMENELILDESLQPLPNAPQKVTATVETKQKGAFENEEDRAGLSYKVVVNSDDA- | |||||||||||||
3 | 5liiP | 0.15 | 0.14 | 4.58 | 3.05 | HHpred | ILDDQITMLTWTNLIFYRDISRRPAQSTVVKYDQYRHGNVGHRFVKEIGVAPVSDPNIR-QKTVSMKYVSDTKNMSIASGLVNN--IADPSQILTEDAIAVVAKTIEWASFYGDASLT---SEVE-GEGLEFGLAKLIDK----------NNVINAKGN--QLTEKHLNEAAVRIGKGFGTATDAYMPIGVHADFVNSILGRQMQLQSGNVNTGYSVNGFYSSRGFIKLHGSTVMENELI--LDESLQPNAPQPAKVATVETKQKGAFENEEDRGLSYKVVVNSDDAQ | |||||||||||||
4 | 5liiP | 0.13 | 0.12 | 4.31 | 1.21 | MUSTER | ILDDQITMLTWTNLIFYRDISRRPAQSTVVKYDQYL-NVGHSRFVKEIGVAPVSDPNI-RQKTVSMKYVSDTKNMSIASGLVNN--IADPSQILTEDAIAVVAKTIEWASFYGDASLTSEV----EGEGLE-----------FDGLAKLIDKNNVINAKGNQLTEKHLNEAAVRIGKGFGTATDAYMPIGVHADFVNSILGRQMQDNSGNVNTGYSVNGFYSSRGFIKLHGSTVMENELILDESLQPLPNAPQPAVTATVETKQKGAFENEE-AGLSYKVVVNSDDAQ | |||||||||||||
5 | 3e8kA | 0.11 | 0.09 | 3.23 | 1.15 | CNFpred | --------------TIRDLLAQGRTSSNALEYVREEVFTN----------APGDSDITFSKQTANVKTIAHWVQAS--RQVMDDA--PMLQSYINNRLMYGLALKEEGQLLNGDGTG-------DNLEGLNKVATAYDTSLNATGD----------------TRADIIAHAIYQVTESEFSASGIVLNPRDWHNIALLKDNEGRYIFGG--PQAFTSNIMW----GLPVVPTKAQAAGTFTVGGFDASQVFDRMDATVEVSR---NMLTILCEERLALAHYRPTAIIK | |||||||||||||
6 | 5liiP | 0.15 | 0.14 | 4.68 | 4.29 | HHsearch-2 | ILDDQITMLTWTNLIFYRDISRRPAQSTVVKYDQYRHGNVGHRFVKEIGVAPVSDPNIR-QKTVSMKYVSDTKNMSIASGLVNN--IADPSQILTEDAIAVVAKTIEWASFYGDASLT---SEVE-GEGLEFGLAKLIDK----------NNVINAKGN--QLTEKHLNEAAVRIGKGFGTATDAYMPIGVHADFVNSILGRQMQLQSGNVNTGYSVNGFYSSRGFIKLHGSTVMENELI--LDESLQPNAPQPAKVTTVETKQKGAFENEEDRGLSYKVVVNSDDAQ | |||||||||||||
7 | 5liiP | 0.14 | 0.13 | 4.41 | 1.49 | Neff-PPAS | ILDDQITMLTWTNLIFYRDISRRPAQSTVVKYDQYLGNVGHSRFVKEIGVAPVSD-PNIRQKTVSMKYVSDTKNMSIASGLVNNIA--DPSQILTEDAIAVVAKTIEWASFYGDASLTSEV----EGEGL-----------EFDGLAKLIDKNNVINAKGNQLTEKHLNEAAVRIGKGFGTATDAYMPIGVHADFVNSILGRQMQDNSGNVNTGYSVNGFYSSRGFIKLHGSTVMENELILDESLQPLPNAPQKVTATVETKQKGAFENEEDRAGLSYKVVVNSDDAQ | |||||||||||||
8 | 5liiP | 0.15 | 0.14 | 4.58 | 6.66 | HHsearch | ILDDQITMLTWTNLIFYRDISRRPAQSTVVKYDQYRHGNVGHRFVKEIGVAPVSDPNIR-QKTVSMKYVSDTKNMSIASGLVNN--IADPSQILTEDAIAVVAKTIEWASFYGDASLT---SEVE-GEGLEFGLAKLIDK----------NNVINAKGN--QLTEKHLNEAAVRIGKGFGTATDAYMPIGVHADFVNSILGRQMQLQSGNVNTGYSVNGFYSSRGFIKLHGSTVMENELI--LDESLQPNAPQPAKVATVETKQKGAFENEEDRGLSYKVVVNSDDA- | |||||||||||||
9 | 5liiP | 0.15 | 0.14 | 4.69 | 1.80 | PROSPECTOR2 | ILDDQITMLTWTNLIFYRDISRRPAQSTVVKYDQYLGNVGHSRFVKEIGVAPVSDPN-IRQKTVSMKYVSDTKNMSIASGLVNNIA--DPSQILTEDAIAVVAKTIEWASFYGDASLTSEVE----GEGL-----------EFDGLAKLIDKNNVINAKGNQLTEKHLNEAAVRIGKGFGTATDAYMPIGVHADFVNSILGRQMQLNSGNVNTGYSVNGFYSSRGFIKLHGSTVMENELVFVGSPQVVHLFELLPMMKLPLAQINASITFAVLWYGALALRAPKKWRY | |||||||||||||
10 | 5liiP | 0.15 | 0.14 | 4.68 | 2.36 | SAM | ILDDQITMLTWTNLIFYRDISRRPAQSTVVKYDQYRHGNVGHRFVKEIGVAPVSDPNIR-QKTVSMKYVSDTKNMSIASGLVNNI--ADPSQILTEDAIAVVAKTIEWASFYGDASLT---SEVE-GEGLEFGLAKLIDKNN----------VINAKGN--QLTEKHLNEAAVRIGKGFGTATDAYMPIGVHADFVNSILGRQMQLQDGNVNTGYSVNGFYSSRGFIKLHGSTVMENELIGEMSPQVVHLFELLPMMKLPLAQINASITFAVLWYGALALRAPKKWAR | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |