>PF17028 (248 residues) RSYDVPSLCYNYHSPEANYQQEFLRPPAIPTVYQVIPMKYFTCVSGACDLIVSRLIGSER YFIYSSFLPADAISIENLLLVLMKKGYEDIASVLLVHLSVFYAPLLSASNAYVLSYLYPA YEKDYENAHRPSLSITWFFHLNIFPQYARYFYDVFYALMLYLFSIVPRGQKIEILLLFKP SNYKSYLLYIADSPLAHFYLLVFILESYVQYLFRVRGVGNPNFLNWSYLIFTCLFILERR WKILMKQK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | RSYDVPSLCYNYHSPEANYQQEFLRPPAIPTVYQVIPMKYFTCVSGACDLIVSRLIGSERYFIYSSFLPADAISIENLLLVLMKKGYEDIASVLLVHLSVFYAPLLSASNAYVLSYLYPAYEKDYENAHRPSLSITWFFHLNIFPQYARYFYDVFYALMLYLFSIVPRGQKIEILLLFKPSNYKSYLLYIADSPLAHFYLLVFILESYVQYLFRVRGVGNPNFLNWSYLIFTCLFILERRWKILMKQK | |||||||||||||||||||
1 | 5u71A1 | 0.10 | 0.09 | 3.45 | 0.64 | SPARKS-K | SLIFVLIWCLVIFEVAASLVVLWYVFYIYVGVADTLLLPLVHTLITVSKILHHKMLHSVLQAPMSTLFSKDIAILDDLPLTIFDFIQLLLIVIGAIAVVAVLQPYILRAYFLQTSQQLKQLESEGRS--------PIFTHLVTSLKGLWTLRAFQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEMIFVIFFIAVTFISILVGIILTLAMNI-----MSTLQWAVNSSIDVDSLMRSVSRVFKFI | |||||||||||||
2 | 4eljA1 | 0.13 | 0.10 | 3.65 | 0.73 | FFAS-3D | ------ALCQKLKIPDHVRERAW---LTWEKVSSVDGVLKKKELWGICIFIAAVDLDEMSF-TFTELQKNIEISVHKFFNLLKEIDTSTKVDNAMSRLL---------KKYDVLFALFSKLERTCELIYLTQLKVSWITFLLAKGEVLVISFQLMLCVLDYFIKLSPPMLL--KEPYKTAVIDTRIIEVLCKEEVANVAFVENLSKRYEEIYLKNKDLDARLFLD----------------------- | |||||||||||||
3 | 3jbrA | 0.16 | 0.15 | 4.83 | 0.29 | HHpred | ----LSSAALAAEDPIRAESVRNQDIATVEIVLKMTTYGAFRNYFNILDLLVSMGLESSTISVVKVLRPLRAINLKQCVFVAIRTIG-NIVLVTTLLVQLFFSCNFHFDNVSAMMSLFRAI-DSNEEDMGPVYNN---------RVEMAIFFIIYIILIAFMMNIEQGETEY-------PNPYQYQVWYVVTSSYFEYLMFALIMLNTICLGMQHYHQSMNHISDILNVAFTIIFTLEMILKLLAFK- | |||||||||||||
4 | 2db0B | 0.12 | 0.10 | 3.60 | 0.67 | MUSTER | ---DIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLY---------EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMA-----KEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLT--------------LNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLDKLRKVVIKRLEELN | |||||||||||||
5 | 3rkoC | 0.10 | 0.08 | 2.96 | 1.03 | CNFpred | ----------------------------LPDAHSQAPTAGSVDLAGILLKTAAYGL----LRFSLPLFPNASAEFAPIAMWLGVIGIFYGAWMAFAQT--DIKRLIAYTSVSHMGFVLIAIYT---------GSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATGNFVGEFMILFGSFQV-----------VPVITVISTFGLVFASVYSLAMLHRA | |||||||||||||
6 | 1vt4I3 | 0.18 | 0.10 | 3.16 | 0.82 | HHsearch-2 | ----------------------------------------------------------------------------------------------------EYALHRS----IVDHYNIPKTFDSDDL-IPPYLDQYFYSHIHHLKNHPERM-TLFRMVFLDFFLEQKIRHDSTAGSILNTQQLKFYKPYICDNDPKYERLVNAILDFLPKIE------ENLICSKYTDLLRIALEDEAIFEEAHKQQR | |||||||||||||
7 | 4plqA | 0.12 | 0.12 | 4.10 | 0.77 | Neff-PPAS | -GSELPQMVQQLNSGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGNEQIQAVIDAG-----ALPALVQLLSSPNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSPN-------EQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGNEQKQAVKEA | |||||||||||||
8 | 5oqkA | 0.10 | 0.03 | 1.06 | 0.35 | HHsearch | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SHMRAPLDFRGMLRKLFSSHRFQVIIICLVVLDALLVLAEDKNNYAAMVFHYMSITILVFFMMEIIFKLFVFR- | |||||||||||||
9 | 4fgvA | 0.10 | 0.10 | 3.69 | 0.64 | SP3 | HTYD-EQLIKMFTEVLTTISNIIPLQMDLKATYPNSNSRDQEFIQNLALFLTSFFTMHLP-LIENLPNRDFLTHGHFYLIRISQIDDREIFKICLDYWLKLVQELYEEMQSLPLNDMSSMGLGMMSGGGAPN-----PALLEHYPLRKHKYKEVLSNLRVVMIEKMVRPEEVLIVEIVREFVKDTDSVQLYKTVYLTHLDVVDMEQIMTEKLARQVDGSEWSWHNCNVLCWAIGSISMAMNEETEKRF | |||||||||||||
10 | 5cwmA | 0.08 | 0.07 | 2.87 | 0.87 | PROSPECTOR2 | DPEDELKRVEKLVKEAEELLRQAKEKGSEEDLEKA--LRTAEEAAREAKKVLEQAEKEGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVL-------------------ELAEKQGDPEVARRAVELVKRVAELLERIARESGSEEAKERAERVREEARELQERVKELRE-R | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |