>PF17006 (287 residues) FKDAFTIDSLLSYSGEAHNFSLNSRADVKMKKSFHTNVKQQIDKIIRHMMTNLNTYDLNT ICSTFNLISGDVEYQHKLVIAHDIILFIDDFSRTPFIISALFNNQGIRNDVLGGTIKEIL LHQCTIDKDIYKNNPHLVGYYNKIIDNFELHPRERSLKDACTSLIGNFKVFEDRTFNSAI FPNMYSVRVLCHYMDWDYTYNEFVRSVLYPRLKETRNPLYAVYMFVVAFNALRVFGDVES VNVVFDKLKEFMSDASDLSIASYLFIKQIDPEGARKWYRSQIESIGH |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | FKDAFTIDSLLSYSGEAHNFSLNSRADVKMKKSFHTNVKQQIDKIIRHMMTNLNTYDLNTICSTFNLISGDVEYQHKLVIAHDIILFIDDFSRTPFIISALFNNQGIRNDVLGGTIKEILLHQCTIDKDIYKNNPHLVGYYNKIIDNFELHPRERSLKDACTSLIGNFKVFEDRTFNSAIFPNMYSVRVLCHYMDWDYTYNEFVRSVLYPRLKETRNPLYAVYMFVVAFNALRVFGDVESVNVVFDKLKEFMSDASDLSIASYLFIKQIDPEGARKWYRSQIESIGH | |||||||||||||||||||
1 | 3l6aA | 0.12 | 0.10 | 3.67 | 1.00 | FFAS-3D | ----------------------------------KEELLKLTETVVTEYLNS---GNANEAVNGVREMR--APKHFLPEMLSKVIILSEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQC----PKLEVDIPLVKSYLAQFAARA-IISELVSISEWLTELFQQSKVNMEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIIKDNISPKLHVDKGFVNILMTSFLQYISSEVNAPKQLLLSFKPVMQKFLHDHVDLQVSALYALQVIEEEAFLAWKEDITQEFP- | |||||||||||||
2 | 3w3tA | 0.08 | 0.07 | 2.87 | 1.03 | CNFpred | ------LPSLLNSLPRFLDD---------GKDDALASVFESLIELVELAPKLFKD-MFDQIIQFTDMVIKNLEPPARTTALELLTVFSEN------APQMCKSN----QNYGQTLVMVTLIMMTEVSAAEWI-EEVTYDHARQALDRVAL---KLGGEYLAAPLFQYLQQMITSTEWRERFAAMMALSSAAEGCADVLIEIPKILDMVIPLINDPHPRVQYGCCNVLGQISTDFSIQRTAHDRILPALISKLTSTSRVQTHAAAALVNFSEFASKDILEPYLDSLLT | |||||||||||||
3 | 1vt4I3 | 0.10 | 0.06 | 2.33 | 1.20 | HHsearch | ------------------------------------------------------EYALHRSIVDHYNIPKTFDSDDLIYFYSHIGHHLKNIEHPFRMVFLDFREQKIRHDSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS-KYTDLL-RIALMAEDE------AIFEEAHKQVQRGGG----------------------GGGGGGGGGGGG----G--GGGGGGGGGGG-------GGGGGGGGGGGG------GGGGGGGGGGGGGGGGG- | |||||||||||||
4 | 5h7cA | 0.09 | 0.08 | 3.24 | 1.02 | PROSPECTOR2 | KFNNLNEEQRNAFIQSL------KDDPSQSANLLAEAKSLNVNQAVKQLAEKAKEATIEIVKELAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLEEVAKEATDKELVEHIEKILEELEQQSAFYEIDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVAKEATDKELVEHIEKILEELQS | |||||||||||||
5 | 5vchA | 0.11 | 0.10 | 3.80 | 0.70 | SPARKS-K | INQAKLGPEITLAALKVASEEIDVEDTNEDENTPALTALRLISNASGEL-------SPSQVGVPIIEHLPTLNPFERRSILLAISVLVTGLSQFDKIIPATVTGKDSEAVVQLAALKCIVQLSTNLQDEVARYHEQYLPLVIDIIDSAKHVVIYKYATLALDGLLEFIKYLDPNKLQQSPKLRAAIVSAIGSCAFAAGSYFKTSVQYLQQFIQNVSQILKALTFENISTRAVKSAAFAEYAEPLVNAAYEAIKDSARLRESGYAFIANAKAPFLQTIIPEIFKTLEQ | |||||||||||||
6 | 3sf4A | 0.09 | 0.08 | 3.22 | 0.97 | FFAS-3D | -----DCRAGVSFFEAA---VQVGTEDLKTLSAIYSQLGNDYAKALEYHHHDLTLARAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNFGGEFPEEVRDALQAAVDFYEEN-LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG-EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAYTALGNHDQAMHFAEKHLEEVGD | |||||||||||||
7 | 6bq1A | 0.17 | 0.16 | 5.26 | 0.45 | HHpred | ---SLSEKQWKDNVNLAWSVQLPARFKNAIGNEVTRLVRLDPGEAIKFLVTWHTIPELSDPPTGLSYFSSMY-PPHPLTAQYGVVLRSFPPDAILFIVQALRYDKGYVREYILWAKSQLLAHQFIWNMKIYLDDPDIGDLLDQLVEEISFYQREFDFFNKITNVSAIIKPYPKGDRKKACLSALSEVKVQAIVLDIDY-----------PMQSAAKAPYLAKF----WQAAIFKVGDDCRALQIIDLFKNIFQSRDQLGMYDY-FTRQYGDESTLAFQQARYNFIRS | |||||||||||||
8 | 1b3uA | 0.09 | 0.09 | 3.40 | 0.72 | MUSTER | ISHEHSPSDLEAHFVPLVKRLAGGDWFTSFSVCYPRVSSAVKAELRQYFRNLCSDDTRRAAASKLGEFAKVLELDNVKSEIIPMFSNLAQDSVRLLAVEACVN-QLLPQEDLEALVMPTLRQAAE-SWRVR---YMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA-------EVRAAASHKVKEFCENLS-ADCRENVIMSQILPCIKEDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDEPEVRLNIISNLDCVNEVGIRQLSQSLLPAIVE | |||||||||||||
9 | 3w3vA | 0.08 | 0.07 | 2.78 | 1.01 | CNFpred | ------LPSLLNSLPRFLDD---------GKDDALASVFESLIELVELAPKLFKD-MFDQIIQFTDMVIKNKLEPPARTTALELLTVFS-----ENAPQMCKSN----QNYGQTLVMVTLIMMTEVDAAEWI-EEVTYDHARQALKRVALKLGGEYLAAPLFQYLQQMITS---TEWRERFAAMMALSSAAKGCADVLIEIPKILDMVIPLINDPHPRVQYGCCNVLGQISTKFSIQRTAHDRILPALISKLTSTSRVQTHAAAALVNFSEFASKDILEPYLDSLLT | |||||||||||||
10 | 2pffB | 0.13 | 0.11 | 4.00 | 0.88 | HHsearch-2 | DDEPTTPGKFLGYVSSLVEPSKV----GQFDQVLNLCLTEFIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV-AIFGGQGNTDDYFEELRDLYQTYHVLV-GDLIKFSAETLSEL-------------------IRTTLDAEKVFTQGLINTPDKDYLLSIPISCPLIGV----IQLAHYVVTAKLLLKGATGHSGLVTAVAIAEDSWESFFVSVRKLFFIGVRCYEAPSEDSLEPSPMLSISNLTQEQDYVNKTNSHLPA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |