>PF16944 (260 residues) TWDYINLDDFKSSSCFTGFSYFLVWVFLGVSIAVYGVDTFTAVNLLVFNKWSSQIQPKIP FSISRWIFAGCIIASFVLLAYRWIRAVRVMRTGSVAESYLDPLAVRVQSIRIGKSKGYRR FLVFAELTKSKKGADYVALFTYFSFESWLRVIFADGPRQVINAITLYSVMELDLIPTGSN AAPAGTSSVAQFFINVEALAEKNYQQAVILFGMLFTLIIWVIAALSLISSVILYLIFLWH HIPTMDGSLKRYCRRKINTR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | TWDYINLDDFKSSSCFTGFSYFLVWVFLGVSIAVYGVDTFTAVNLLVFNKWSSQIQPKIPFSISRWIFAGCIIASFVLLAYRWIRAVRVMRTGSVAESYLDPLAVRVQSIRIGKSKGYRRFLVFAELTKSKKGADYVALFTYFSFESWLRVIFADGPRQVINAITLYSVMELDLIPTGSNAAPAGTSSVAQFFINVEALAEKNYQQAVILFGMLFTLIIWVIAALSLISSVILYLIFLWHHIPTMDGSLKRYCRRKINTR | |||||||||||||||||||
1 | 4zwjA | 0.13 | 0.12 | 4.15 | 0.90 | SPARKS-K | INFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHG-YFV-----FGPTNLQGFFATLGGEIALWSLVVLAIERYVVVCK---PMSNFRTWVMALACAAPPLAGWSRYIPEGLQC---------SCGIDYYTFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAQQESATTQKAEKEVTRMVIIYVIAFLICWVPYASVAFYIFTHIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNVI | |||||||||||||
2 | 1pw4A2 | 0.12 | 0.09 | 3.15 | 0.81 | FFAS-3D | TAKQIFMQYVLPN----KLLWYIAIANVFVYLLRYGILDWSPTYL--------KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRTGVFFMTLVTIATIVYWMNPAGN----------------------------PTVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAGFTGLFGYLG------GSVAASAIVGYTGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE--------- | |||||||||||||
3 | 2pffA1 | 0.17 | 0.11 | 3.66 | 0.36 | HHpred | ----------------------------------DVEALIEFIYDTEKNGGLGWLDAIIPHIDSKSEFAHRIMLTNILRMMKKQKSARGIETRPASESSLETLFNRWHSES-----WANQLTVCGAIIGWTEGIEKMGVRTFSQKEMAFNLLGLLTPEVVE----LC----QKSPVMADLNGLQFVPELKEFTAKLRELVETEVRKAVSIETALE--------------------------------------------- | |||||||||||||
4 | 4djiA | 0.12 | 0.11 | 3.82 | 0.67 | MUSTER | AW----VSNT----LGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSY---ILKWPALNEDPITKTIAALIILWALALTQFYTARIAKVGFFAGILLPAFILIALAAIYLHSGIEMDSKTF-----FPDFSKVGTLVVFVFILSYMGVEASTHVNNPLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAA---FA-----KMNKN | |||||||||||||
5 | 3rkoB | 0.09 | 0.07 | 2.67 | 1.13 | CNFpred | ---------------------MWATLMLLGGAVGKSAQLPLQTWLADAM--------AGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMS-----QIGYMFLALGAWDAAIFHLMTHAFFKALLFLASGSVILACHEQNIFKMGGLSIPLVYLCFLGGAALSALLVTAGFFSKDEILAGAMMVAGLVGAFMTSLYTFRMIFIVFH----------------- | |||||||||||||
6 | 1vt4I3 | 0.15 | 0.07 | 2.47 | 0.81 | HHsearch-2 | -------------------------------------------------------------------------------------------EYALHRSIVDNIPKTFDSDDLI--PPYLDQYFYSHIGHHLKNIEHPERMTLFRM------VFLD-FRFLEQ------KIRHD--STAWNASGSILNTLQQLKFYKPYICDNDKYERLVNAI----------------------LDFLPKIENLICSKYTDLLREEAHKQ | |||||||||||||
7 | 4d49A | 0.07 | 0.07 | 2.65 | 0.74 | Neff-PPAS | ------VQQLNSPDQQELQSALRKLSQIASGGNEQIQKLIEAGALSPLVKLLDDASEEVIKEAVWAIANIASGNNEQIQKLIEAGALSPLVKLDASEEVIKEAVWAIANIASGNNEQIQKLIEAG------------------ALSPLVKLLDDASEEVIKEAVWAIANIASGNNEQIQKLIEAG------ALSPLVKLLDDASEEVIKEAVWAIANIASGNNEMKQKLEEAGALPALEKLQSHANEEVQKNAQAALEAF | |||||||||||||
8 | 3mseB1 | 0.11 | 0.02 | 0.55 | 0.27 | HHsearch | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ISPNVLNNMKSYMKHSNIRNIIINIMAHELSVIN-NH------------------------------------ | |||||||||||||
9 | 3m16A | 0.11 | 0.10 | 3.57 | 0.64 | SP3 | TGDIEAIKQFKLANYQHLIEEAIDWALQIKGNKNSQTTLENVGDKLAV-NIGCEVLTSIPRKLIRLYQDAGIDSDRILITWEGIQAAKILEAEGIHCNF--HFAQAQACAEAGT----TLISPFDWYKANSGQSEYSASEDVVSVTEIYNFYKSHGTGEIEEPELLAQLEADTSPLEQKLFPIKETKDTPELLTEASFRWANNDPAHDKLADGIRRFAADQVTLESLSKKISQR-------------------------- | |||||||||||||
10 | 5zkpA | 0.08 | 0.08 | 3.18 | 0.89 | PROSPECTOR2 | SSHMDSFARLYPCKKFNEIKIFMVNVAGCLFFINTYCSVAFASYFLILDSFEHYEKGSVPVLIIHIFIVFSFFLVFLIILFCNLVIIRTLLMQAGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAIADLWMACTVLAVFIICFVPHHVVQLPWTLAELGFQDSKFHQLTEKFYSMRSSR | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |