>PF16858 (289 residues) PWQSLDPFDSLDSKPFKKGKPYSVPTCVEETPGQKRKRKGSTKLQDFHQWYLAAYADHAD SRRTRRKGPTFADMEVLYWKHVSEQLETLRKLQRRETAEQWLPRTEEEMWPAEDDHLGDS LEGLGAADDFLEPEEDVEIEGAKPGEAADMDAEAMPESLRYEELVRRNVELFIATSQKFV QETELSQRIRDWEDTIQPLLQEQEQHEPFDIHTYGDQVVSRFTQLNEWCPFAELVAGQSA FEVCRSMLASLQLANDYTVEIRQQPGLETAVDTMSLRLLTHQRAHKRFQ |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | PWQSLDPFDSLDSKPFKKGKPYSVPTCVEETPGQKRKRKGSTKLQDFHQWYLAAYADHADSRRTRRKGPTFADMEVLYWKHVSEQLETLRKLQRRETAEQWLPRTEEEMWPAEDDHLGDSLEGLGAADDFLEPEEDVEIEGAKPGEAADMDAEAMPESLRYEELVRRNVELFIATSQKFVQETELSQRIRDWEDTIQPLLQEQEQHEPFDIHTYGDQVVSRFTQLNEWCPFAELVAGQSAFEVCRSMLASLQLANDYTVEIRQQPGLETAVDTMSLRLLTHQRAHKRFQ | |||||||||||||||||||
1 | 3tnfB | 0.08 | 0.08 | 3.15 | 1.11 | Neff-PPAS | LEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKEKSFFNEKGEEVTSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGEDWESIK | |||||||||||||
2 | 4i99C | 0.23 | 0.05 | 1.63 | 1.19 | HHsearch | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DIEKYVEELYKVVKKTGTPIKFWDLVPDVEPKIIARTFLYLLFLENMGRVEIIQEEPF----GEILVVPM---------- | |||||||||||||
3 | 5zvs22 | 0.11 | 0.09 | 3.41 | 0.68 | SPARKS-K | VWGLSDVLSQFGQHY-RR------PKPAPETASSSINQITSDALKARVMKGRYNWERLSSSLSLNVRVPSLFDVPGKWVASVEDMFTSLNRCIRRPTHSFSRLPLAIDPDVPQVAGADPANDDHWFKYTCLGD----IPSATRNYFGESLFVGRVVSGLDVEAVDATLLRLKIEAFIAVLNGIGMSSEAHQIAGRISLA----------NAQVQIARVVHSIPSSWMTLNTGPYIHHHAYDPILKLLCTSYAMTVAGPVR------------TSIVTEIDGAALSGNLR | |||||||||||||
4 | 4whjA2 | 0.11 | 0.08 | 2.97 | 0.68 | FFAS-3D | ------------------GA------DIPSQEADKMF-FLIEKIKMFNQDIEKLVEGEEVVRENETR--LYNKIREDFKGILATNTQKVKNIIHEEVEKY-------------------------------------------EKQAAAAELLGFVNYKTFEIIVHQYIQQLVEPALSMLQKEIIQQAFINVENMIQLQFRMEQMVFSFTLNAYFLETSKRLANQ-IPFIIQYFMLRENGDSLQKAMMQILWLLQEQSETATKRRILKERIYRL-------TQARHALC | |||||||||||||
5 | 1w1wE | 0.15 | 0.03 | 1.16 | 0.54 | HHpred | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IVQMAKILRKELSE-EKEVIFTDVLKSQAKREASRGFFDILSLATEGCIGLSQTE----AFGNIKIDAKPA-------- | |||||||||||||
6 | 5cwmA | 0.14 | 0.11 | 3.66 | 0.74 | MUSTER | --------------------------------------DPEDELKRVEKLVKEAEELLRQAKEKGS-----EEDLEKALRTAEEAAREAKKVLEQAEKE------------------GDPEVALRAVELVVRVAELLLRIAKESGSEEALE-----RALRVAEEAARLAKRVLELAEKQGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARL--AKRVLELAEKQGDPEVARRAVELVKRVAELLERIARESGSEEAKERAERVREEARELQERVK | |||||||||||||
7 | 4fyeA | 0.09 | 0.04 | 1.73 | 0.61 | CNFpred | ---------------------------------------------DKAGALHTLLK-----------GPDVSDLNQQITEKENALKEVKGAYREALFSY---------------------------FEEYQKGEGKWDQ--------------------AKLDQLKNQVDGYEKSIK--KQESAIYELHNQIDALRKAYYTEHKGQINKALQELKEQISPVIQNKETDPETKSRLQ--HFYNSCAYLTQAQELYY---------------------------------- | |||||||||||||
8 | 4i99C | 0.23 | 0.05 | 1.63 | 0.92 | HHsearch-2 | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DIEKYVEELYKVVKKTGTPIKFWDLVPDVEPKIIARTFLYLLFLENMGRVEIIQEEP----FGEILVVPM---------- | |||||||||||||
9 | 5nnvA | 0.06 | 0.05 | 2.10 | 1.10 | Neff-PPAS | ----------------------------------------KEEELAESSAISAKEAKIEDTRDKIQALESVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQQLSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSESSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEKRLYKQKTTLL--------------------- | |||||||||||||
10 | 5h66C | 0.16 | 0.04 | 1.26 | 1.07 | HHsearch | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PIEARMNEIVHSLKSRGTRINFMDLFPYEQKEHLVVTFLAVLELMKNQLVLIEQEHNF----SDIYITGS--E------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |