>PF16477 (292 residues) IASDPWKIARYRELLRLRDRWIEDGRLDRDSEAYARFCNRLMLIPEHTWGLNNSVYLVDF VNYSSADLAAARARDIVEDNTRKKFDYLCQQANGTRSYSHYESSWQEQRDYLEEALQSLP AALAAEARTELDRMSPQHTVLNSEPVQPQPIETNELYELGQFQVSFAADGSINRLMDRSG KAWAGEHQRLGTYMYETFGQENYDRFFKEYMTNLDIHHGWADNDFGKPGIEYVKPRPEHQ RYTASLRTLHLERHADYDIVTAEMKLPEVLSNQYGAPRQINVFYSFHANEPV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | IASDPWKIARYRELLRLRDRWIEDGRLDRDSEAYARFCNRLMLIPEHTWGLNNSVYLVDFVNYSSADLAAARARDIVEDNTRKKFDYLCQQANGTRSYSHYESSWQEQRDYLEEALQSLPAALAAEARTELDRMSPQHTVLNSEPVQPQPIETNELYELGQFQVSFAADGSINRLMDRSGKAWAGEHQRLGTYMYETFGQENYDRFFKEYMTNLDIHHGWADNDFGKPGIEYVKPRPEHQRYTASLRTLHLERHADYDIVTAEMKLPEVLSNQYGAPRQINVFYSFHANEPV | |||||||||||||||||||
1 | 4lq8A | 0.13 | 0.11 | 3.78 | 0.77 | SPARKS-K | ------------EADDGFIVTSNISPDSQTSDPITKAVRETII------------------QPQKDNLIEQILKDLTDRDLAEQKRKEIEEEKKDKTLSTFFGN-PANREFIDKALPELKKKLESIEIAGYKNVHNTFSAASGYPGGFKPVQWENHVDLRATVVKNDAGDELCTLNETKPFTLAKQDGTQVQISYREID----------FPIKLDQADGSVALKADGTKPSKDK---------AVYFTAHYEEGPNGKPQLKEISSP-KPLKFAGAIAYIEHIYTLAVTRGK | |||||||||||||
2 | 4tkoB | 0.09 | 0.08 | 2.87 | 0.64 | FFAS-3D | MSALLEKKKALEIKIQKISLSAKKLKVESLKKKREALREKLLQVEEKI-------------KLVKLDWERYKSLQKGLIPRRKFEEVDTNLKVLLHEREYLEKSIQEINTEIKRAKKGI--ENARNEFKTIEELKKELSSLEEEIKSLKERIKTAEQKIKDTVLIAPFDGVVAKRFISRGD-VVRAGQPAFALVEVLLEETKLKGV--------------------KVGNKAYVDAYPDILFEGVVEEI---SPVQRIPVKIKITKGDLSLLRVGMGGEVEIR--------- | |||||||||||||
3 | 5jm0A | 0.11 | 0.08 | 2.74 | 0.48 | HHpred | -TSQAQTKKLMRLSEIKLHDLEWIAAKKYPSKQINELWENVLLCQFHDVLPCIEMV---YKYEAVPMLHNVVK---------------------------------ECTSLIDKTVQFLQSQSK--------ADLVEMRTLG--------YDDYIVLANGKLKVIICKTGVITSITDELGVEYLD----FV--IYDDK------------------PLGWQAWDTELYSVNQYKYV-------TKPKKVQVSCNKEKCAVEVIFQISKCVISNATKLSKVDISTTVNWDA-- | |||||||||||||
4 | 2yjnA | 0.12 | 0.10 | 3.65 | 0.67 | MUSTER | FSSMAS-KSHLFGLVPLAWAFRAAG-HE--SPALTEDITAA--------GLTAVPVGTDVD--LVDFMTHAGHDIIDYVRSLDFSERDPATLT----WEHLLGMQTVLTPTFYAL--MSPDTLIEGMVSFCRKWRPD-----WEPLTFAAPIAAAVTGT---HARLLWGPDITTRARQGLLPDQPEEHREDPL------AEWLTWTLEKYGGPAFDEEVVVGQWTIDPAPAAIRLDTGLKTVGMRYVDYWLHDEPERRRVCLTLVSIEELLGAVGDVD-AEIIATFDAQQLE | |||||||||||||
5 | 2wyhA | 0.14 | 0.09 | 3.15 | 0.73 | CNFpred | -----RQLENITEPLAAMAYEVTSTY---PHDQLRYAWKTLMQNHPHDSICGCS----------------------------------------------VDSVHREMMTRFEKAYEVGHYLAKEAAKQIADAIDTRDFPM----------------DSQPFVLFNTSGHSKTSVAE----------LSLTWKKYHF-FPKEVYQEAQEYLARLSQSFQIIDTS--------GQVRPEAEILGTSIAFDYDPYFAIKVRLRLPITLPA------MSWKTLALKLGN------ | |||||||||||||
6 | 5jm0A | 0.13 | 0.11 | 3.68 | 0.96 | HHsearch-2 | GGGGPTE--EMLQKMRRIRSMNNNVIPQVG-ITVDEFYDDILKHDLPTWSGELYFEFHR-GTYTSAQTKKLRLSIKLH--DLEWIAAKTSVLSYKYPSKQINELWENVLVYLHNVVKECT-SLIDKTVQFLQSQSVEMRTLG--------YDDYIVLANGKLKVIICKTGVITSITDELGVEYLD----FV--IYDDK------------------PLGWQAWDTELYSVNQYKYV-------TKPKKVQVSCTKEKCAVEVIFQIS--------EKCKIKSVISLNATKLK | |||||||||||||
7 | 1iu4A | 0.08 | 0.07 | 2.76 | 0.83 | Neff-PPAS | -------VNNYIRKWQQVYSHRDGRKQQMTEEQREWLSYGCVGVTWVNSGQYPTNRLA-FASFDEDRFKNELKNGRPRSGETRAEFEGRVAKES----FDEEKGFQRAREVASVMNRALENHDESAYLDNLKKELANGNDALRNEDARSPF--------------YSALRNTPSFKERNGGNHDPSRMKAVIYSKHFWSDKRKYGDPDAFRPAPGTGLVDMSRDRNIPRSPTSPGEADADKTVWTHGNHYHAPNGSLGAMHVYESKFRNWSEGYSDFDRGAYVITFIPKSWN | |||||||||||||
8 | 2wyhA2 | 0.17 | 0.07 | 2.15 | 0.90 | HHsearch | ------------------------------------------------------------------------------------------------------------------------------------------------TV-SLYDDSNQCLENGFLKVMIQTDGRL-TITDKSGLIYQ----DLL--RFEDC------------------GDIGNEYISRQPNHDQPFY---AD-QG--TIKLNISNTAQVAELEIQQTFPISADKQARRELTLTTLIRMEKNNP- | |||||||||||||
9 | 3ob8A2 | 0.12 | 0.05 | 1.81 | 0.89 | SP3 | ------------------------------------------------------------------------------------------------------------------------------------ELPLKVPDFVTETAEKAAGKRYVSVESSGLHFILDLLGKIESLK-VKGKEISSKFEG---------------------SSEPRDFKNWKKY-----NIDL---------MKQNIHGVSVEKGSNGSLAVVTVNSRSPVVFYYGFANKINLNTSMKLTGEY | |||||||||||||
10 | 3tnfB | 0.12 | 0.11 | 3.86 | 0.82 | PROSPECTOR2 | L-------DEYEQAIKRAQENIKKGELDKLERQGKDLEDKYKTYEENLEGFE--KLLTDSEELSLSEINEKMEA------FSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANL---------QVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQIMSTDPKENEEATKLFNEKGEEVTSLNDAHYVGKDQQLFNLGGKFYPIHKEQKILEK----DGKFYLLKQGEDWESIKDSQYETPMTVKKLVHHNKSK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |