>PF16240 (282 residues) MDFYFVKYKFRGRVTGEDGVGYFFGKVNDAPEYDLIVVPTRFANYLSIDLSADYVTFTKN FSELKRRIFQQIPEAEDMTRELSNYLKSYINRKGGPLFGSELTAAIQGKDADLVHYIIQE VFKEWAPKVEVAVEFSEVTHEELSAESFTQLLEEFENEGFADTLKRADLVDLPEVFPLID PIKGRTIADFDLGDPIFFVVLNVRKPEHLELLKTLYPKHFSKGVNVVPLAGTLIAKELVK GKKTDYFLIKVDMGNGFVGKAIVPKSIKVMSDYSRYEEKISQ |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | MDFYFVKYKFRGRVTGEDGVGYFFGKVNDAPEYDLIVVPTRFANYLSIDLSADYVTFTKNFSELKRRIFQQIPEAEDMTRELSNYLKSYINRKGGPLFGSELTAAIQGKDADLVHYIIQEVFKEWAPKVEVAVEFSEVTHEELSAESFTQLLEEFENEGFADTLKRADLVDLPEVFPLIDPIKGRTIADFDLGDPIFFVVLNVRKPEHLELLKTLYPKHFSKGVNVVPLAGTLIAKELVKGKKTDYFLIKVDMGNGFVGKAIVPKSIKVMSDYSRYEEKISQ | |||||||||||||||||||
1 | 1p35A | 0.10 | 0.08 | 3.04 | 0.81 | SPARKS-K | VSQTIIRDCQVDKQT-RELVYINKIMNTQLTKPVLMMFNISGPIRSVTRKNNNRDRIKSKVDEQFDQLERDYSDQMDGGSVLKSKFAKILKSHDYTD----------KKSIEAYEKYLPKLVDERN-DYYVAVCVLK---------------------------PGFENGSNQVLSFEYNPIGNKVIHEINDTYDVVAYVDSQFDGEQFEEFVQSLPSSFKNSENKSMIYKALEFTTESSWGKSEFCNGFIYDKKSKVLYVKLHNNVILNTIKA-------- | |||||||||||||
2 | 5woyA | 0.12 | 0.11 | 3.74 | 0.72 | FFAS-3D | ----MLKGVAASPG---IAIGKAFLYTKEKVTI-------NVEKIEESKVEEEIAKFRKALEVTQEEIEKIKEKLKEFGKEKAEIFEAHLMLASDPELIEGVENMIKTELDNAVNKVIEQNASVMESLNDEYLKERAVDLRDVGNRIIENLLGVKSVNLSDLEEE---------VVVIARDLTPSDTATMKKEMVLGFATDVGGRTSHTAIMARSLE-----------IPA-VVGLGNVTSQVKAGDLVIVD---GLEGIVIVNPDEKTVEDYKSKKESYEK | |||||||||||||
3 | 2f1mC | 0.10 | 0.07 | 2.77 | 0.30 | HHpred | ---TELPGRTSAYQVSG-IILKRNFKEGS--------DIEAGVSLYQIDPAT----YQATYDSAKGDLAKAQAAANIAQLTVNR-YQKLLGTQ-Y-ISKQEYDQAL--ADAQQANAAVTAAKAAVE-----------TARINLAYT---KVTSPISKSTEGALVQNGQLADPIYVDVTQSSNDNGTLKQENGKAKVSLITSDGIKF---------------------PQDGTLEFSDVTVDQTTGSITLRAIFPNPD-HT--PG-FVRARLEE--------- | |||||||||||||
4 | 6owsA | 0.14 | 0.13 | 4.38 | 0.64 | MUSTER | QGWFMTSFQLPSDATAERTRNVVLKDNPDVKSNTAILGWGFSGAVAFTTL-KDFKERTSSASKMTSDVNSSMANSTEGETMA---VLPPAIDELGTFSGFSLRLQDRALGMPALLAAQDELMAMAAKNKKFYMVWNEGL------PQGDNISLKIDREKLSALVKFSDVSDIISTS-----MGSMYINDFPNGRMQQVIVQEAKSRMQLKDILNLK---MGSSGQLVSL-SEVVTPQWNKANGRPSLSIAGIPNFDTSGEAMLPKGIGYEWTISLQEKQSES | |||||||||||||
5 | 2fgeA | 0.08 | 0.07 | 2.79 | 0.64 | CNFpred | GGISVYPLTSSVREPCSKIIVRGKSMAGRA--DDLFNLMN--CLLQEVQF-TDQQRFKQFVSQSRARMENRLGSGHGIAAARMGWMSEQMGGLSYLEFLHTLEKKVDE-DWEGISSSLEEIRRSLLAGCIVNMTADGKSLTNVEKSVLDLLPENPSGGLVTWDGRLP------RNEAIVIPT----------VNYVGKAGNIYELDGSAYVISKHISN--------TWLWDRVRVSGGA-----YGGFCDFDSHSGVFSYLSYRD-PNLLKTLDIYDGTGDF | |||||||||||||
6 | 3d0wA | 0.12 | 0.04 | 1.25 | 0.45 | HHsearch-2 | ------------------------------------------GT-IKEDILKDFEEFKGYLKKQVNRGKKLDGKLVKSAAILGDYLAKHEEPQNGEELLQELWSVADEDEKEHLAQLLVKLVDKQ------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 1p35A | 0.11 | 0.10 | 3.57 | 0.68 | Neff-PPAS | VSQTIIRDCQVDKQTRELVYINKIMNTQLTKPVLMMFNISGPIRSVTRKNNNLRDRIKSKVDEQFDQLERDYFHDSIKYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIEAYEKYCLPKLVDDYYVAVCVLKPGFENGS---------------------------NQVLSFEYNPIGNKVIVPFAHEDVVAYVDSVQFDGEQFEEFVQSLILPSSASKNKSMIYKALEFTTESSWGKSEKYNWKIFCNGFIYDK----KSKVLYVKLHNVTSALNK | |||||||||||||
8 | 1vt4I3 | 0.11 | 0.09 | 3.07 | 0.90 | HHsearch | ---------------------EYALDHYNIPKTDL--IPPYLQYFYSILFRMVFLDFRFLE----QKIRHDST-AWNASG---S----ILN----TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK---YTDLLRIALMAEDEAIFEEAHKQV-QRGGGGGGGGGGG--GGGGGGGGGGGGGGGGGG---GGGGGGG--G------GGG---GGGGGGGGGGGGG--GGGGGGGGGGGG--GGGGGGGGGG-GGGGGGGGGGGGGGGGGGG- | |||||||||||||
9 | 2yr4A | 0.09 | 0.08 | 3.10 | 0.60 | SP3 | DAAPI----KVFPNPGKVPTEFVFGN-------RVDRYVGSDPKDWE-DPDSPTLKVLGVVAGGLVGNPQGENVAMYPPAKIAAILNAATPPADERIQTKYWPEFIAQYDGLTLGAAVREIVTVAFEKGTLPPVDGVLDVDESISYYVELFGRFGFGTGGFKPLYNISLVEM--------------MRLILWDYSNEYTLPVTENVEFIRNLFLKAQNVGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHNA--VHSEAYDFVILAVPHDQLTPIVSR | |||||||||||||
10 | 1p35a | 0.09 | 0.07 | 2.85 | 0.98 | PROSPECTOR2 | VSQTIIRDCQVDKQTRELVYINKIMNTQLTKPVLMMFNISGPIRSVTRKNNNLRDRIKSKVDEQFDQLERDYSDQMDNGSVLKSKFAKILKSHDYTDKKS----------IEAYEKYCLPKLVDERNDYYVAVCVLKPG---------------------------FENGSNQVLSFEYNPIGNKVIHEINDTGDVVAYVDSQFDGEQFEEFVQSLILPSSFKKNKSMIYKALEFTTESSWGKSEKYNWKIFCKSKVLVTSALNKNVILNTIK--------A | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |