>PF16223 (268 residues) NEKLASQPLLTQMNSPNSSTPICQYHFDATQEDYDLWNNEHPDYFPMKIFPIISGQKFSL KVDPILENEYGNIDYIARSKAGLNSTNDIGDFSIPNKGIIAFEMELKIPTVAVGNSSYIS NIDFTGVTNNGYTVRSNYGFHTGTYDPDFGENPPTLNYSLAYRVSDNSGPDHPYFKSQNM TNNMNGYQRLGIYINQNTKQVGFILNGVDQGYQSNLPAPLANIRFSIMNGIAIYSEQLFG QELSSELITDRNALQFSYPQGTTDMCGN |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | NEKLASQPLLTQMNSPNSSTPICQYHFDATQEDYDLWNNEHPDYFPMKIFPIISGQKFSLKVDPILENEYGNIDYIARSKAGLNSTNDIGDFSIPNKGIIAFEMELKIPTVAVGNSSYISNIDFTGVTNNGYTVRSNYGFHTGTYDPDFGENPPTLNYSLAYRVSDNSGPDHPYFKSQNMTNNMNGYQRLGIYINQNTKQVGFILNGVDQGYQSNLPAPLANIRFSIMNGIAIYSEQLFGQELSSELITDRNALQFSYPQGTTDMCGN | |||||||||||||||||||
1 | 2zzjA | 0.07 | 0.06 | 2.43 | 0.80 | SPARKS-K | ---------------------TRSFYNDGHLNGWDYVRKENQGTVSEVSNVVFKGSALKMTQTYTPGYTGRYHSEVDHNRGYQRG----------EEQFYGFAFRLS--EDWQFQPQSYNIAQFIANRPGDDWMPSTMIWIQNN----------QLYSRYVNGHYRQPNCGRNIVTRPNATVSAGAWHRVVLQIKWASDYFKIWFDGHEENVATTVDDDSVQFRVGLYANSWHMTGTQGFRQVWYDEVAVGTTFADVDPDQA------ | |||||||||||||
2 | 2fnjA | 0.15 | 0.11 | 3.78 | 0.66 | FFAS-3D | -ARI--DILLDMPPASRDLQLKHSWNSEDRSLNI-----------------FVKEDDKLTFHRHPVAQ----STDCIRGKVGL------------TKGLHIWE--IYWPTRQRGTH------AVVGVCTADAPLHS------VGYQSLVGSTEQSWGWDLKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSFIVDQQYLGFRGLRGKKL-YPIVSAVWG---------HCEITMRYIGGLD----PEPLPLMDLC-- | |||||||||||||
3 | 4xw3A | 0.14 | 0.09 | 2.94 | 0.35 | HHpred | -----------------------------------QMNPYD-----RGSAFAIGGLCCQS--REV-----------------KEWHGCRATKGLM-KGKHYYEVSCHDQ-------G-LCR---VGWSTMQASL-------------DLGTDKFGFGF----GG-TGK-KSHN-KQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPMKQALFPACVLK---------NAE--LKFNFGEEEFKFPPKDGFVALSKA | |||||||||||||
4 | 6nzkA1 | 0.13 | 0.13 | 4.37 | 0.77 | MUSTER | ----------VIGDLKCTSDNINDKDTGPPPISTDTVDVTNGLGTYYVLDRVYLNTTLFLNGYPTSGSTYRNMALKGSVLLSRLWFKPP-FLSDFINGIFAKVKNTKVIKSTFVNTSYSVVVQPRTINKLQGLLEVSVCQYNMCEYPQTICHPNLGNHRKELWHLDTGVVSCLYKRNFTYDVNAD-YLYFHFYQEGGTFYAYFTDTGVVTKFLFNVYMALSHYYVMPLTCNSKLTLEYVTPLTSRQYLLAFN--QDGIIFNAVD-CMS | |||||||||||||
5 | 3u75A | 0.12 | 0.06 | 2.12 | 1.27 | CNFpred | -------------------------------------------------------------------------------------------------GLFDFNITFKVLNLNVSPGKTHFDILINSQELNSSVDSIKIGFDSS-----------QSSFYIDRHIPNVEFPRKQFFTDLAAYLE-LRVFSLYGIVDKN--IIELYFNDGTVAMTNTFFMGKYPHDIQIVTDTE-------EPLFELESVIIRELNK------------- | |||||||||||||
6 | 4om9A3 | 0.12 | 0.10 | 3.41 | 0.81 | HHsearch-2 | NGTVILGAKTFNNIYVAGGPGTVQLNAE------NALGEGDYA---GIFFLDLNGHNQTFKKIAATDS----GTTITNSNTKVNNYIYHGNV----DGNVRLEHHLDTARLILDGD-IQ--AN-SISIKNAPLVMQGHATDHIFRTVSDLSQPDWETRKFRNLNIEDSSSIARNADEGNIQAK-NSVINIG----------------DKTAYIDLYSGKNAGFTFRIKSGDSIGESKFTGG-----IMATDGSIS------------- | |||||||||||||
7 | 5x59A2 | 0.10 | 0.10 | 3.62 | 0.95 | Neff-PPAS | KSACIEVDIQQTFFDKTWPRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYVYSAGHATGTTPQKLFVANYSQDVAAANSTGTVIISPKIYPAFMLGSSVGNFSDGKMGRFFNHTLVLLPDGCGTLLRAFYCILEPRSGNHCPAGNSYTSFATYHTPATDCSDGNYNRNASLNSFTEDEILEWFGITQTAQGVHLFSSGGNMFQFATLPDTIKYYSIIPHSIRSIQSDRKAWAAFYVYKLQPLTFLLDFSVDGYIRRAI- | |||||||||||||
8 | 4qt6A | 0.08 | 0.04 | 1.78 | 0.62 | HHsearch | -----------------------------------GFDPE-----KAQCC-LVENGQI---------------LTH--GS--GGKGYGLASTGVT-SGCYQWKFYIVKENR---GNEG-TC---VGVSRWPVH----------DFNHRTTS--D----W-LYRAYSGNLYNGEQTLTLS---SFTQGDFITCVLD-EARTISFGKNGEEPKLAFEDVDA-AELY--PCV-FY---SSNPGEKV--KICDQR----------------- | |||||||||||||
9 | 3emwA | 0.12 | 0.09 | 3.13 | 0.84 | SP3 | -----------------------------------LYFQSMPEGLEELLSAPPPDLGAQRRHGWNPKDCSENIEVKEGGLYFERRPVAQSTDGAYSRGLHAWEISW--------PLEQRGTHAVVGVATALAPL------QTDHYAALLGSNSESWGWDIGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTYLGPARGLKGRTLYPAVSAVWG---------QCQVRIRYLGE------------------ | |||||||||||||
10 | 4es8A | 0.11 | 0.10 | 3.79 | 0.93 | PROSPECTOR2 | EELPDDLMNFKGTWEVSADGSSGSYVFHLIPAKDVKKPGWREHNEVKDSYIKIDKQSIAARYKTSTTAPYSVAFKVNTKSLIKDHDYKITFEQGQIASGITVDYRIGSAFNKTTDDSFASNVKIEGEEQQREQGDKTISFRT-------LKEGPMSLVLLSKVEKKPQGDLDVEFKNLKIIDVTNPSQLDKGVAYVGNKNVQLTLKSDDGGDEISLFNSRGELLQTVTVTKDQQNPLKNKEKLKVSIKQKQSKKTSKDVGIDPKVEAK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |