>PF16126 (273 residues) AHTAYSLVPPDQYFGAHPEYFSEVNGKRVGKGGQLCLSNPDVLKIATAGVRQWARDEPEA DIISVSETDSHGHCQCGNCRILIDREGSHAGPLLHFVNRIADNIREEFPELAVGMLAYNH MYSRIPPKHVRPRPNVVVRLVTSGCCRFHSLATCDSDFAYEGSVQFRDDITGWKNAGDSL YVWNYVADYGDFLAPLPNLHILQSDIRFFIEHNVKGIFEQGISGMPGGEFAELRSYLLAR CLWQPECDWQQVMDEFLEAYYGAAATSIRAYID |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | AHTAYSLVPPDQYFGAHPEYFSEVNGKRVGKGGQLCLSNPDVLKIATAGVRQWARDEPEADIISVSETDSHGHCQCGNCRILIDREGSHAGPLLHFVNRIADNIREEFPELAVGMLAYNHMYSRIPPKHVRPRPNVVVRLVTSGCCRFHSLATCDSDFAYEGSVQFRDDITGWKNAGDSLYVWNYVADYGDFLAPLPNLHILQSDIRFFIEHNVKGIFEQGISGMPGGEFAELRSYLLARCLWQPECDWQQVMDEFLEAYYGAAATSIRAYID | |||||||||||||||||||
1 | 2epoA | 0.10 | 0.08 | 3.15 | 1.09 | SPARKS-K | AHL--------SAFVKWGIKEVQE-LRDVE--DILLIGEEKVYDLIEGMFQTMAH--LHTRKINIGMDEAHLVGLGRYLIKHGFQN--RSLLMCQHLERVLDIADKYGFNCQMWSDMFFKLMSGQYDRDVRLKERVTLVYWDY---------------YQDSEEKYNRNFQNHHKISQDIAFAGGAWKWIGFTPHNHFRLVAIEANKACRKNQVKEVIVTGWGDNGGETSQLPALQIWAELAYRNDLKK---VSEHFLVSTGLDFDDFMKIDL | |||||||||||||
2 | 5diyA1 | 0.13 | 0.11 | 3.93 | 0.94 | FFAS-3D | -ELWREPYKEEQLQSCGINFFAISPG------LSLVYSSEEELETLIRKITPFLE--MGVHSIGIFFDNVPFDLIHEEDRN---SYSNLAEAQADFLTRVLQRLESTISTPQIIMCPTFYCNDPNLEYLRRLPKNIDVFWT------------GPNVCSHEITTSHMQEVQ--KSLQRPATLWDNYPVNDHIGPYDHRDPELHT--------HVVGIYAN---PMALPEASKLPLYTFAQYLNSPQYNPQDSWRQAVSTLLGENLSAMEKFYQ | |||||||||||||
3 | 2epoA | 0.09 | 0.08 | 3.03 | 1.67 | HHpred | AHL--------SAFVKWGIKEELRDV-----EDILLIGEEKVYDLIEGMFQTMAH-LH-TRKINIGMDEAHLVGLGRYLIKHGFQ--NRSLLMCQHLERVLDIADKYGF--NCQMWSD--MFFKLMEETLRLKERVTLVYWDY------YQDS---------EEKYNRNFQNHHKISQDIAFAGGAWKWIG-FTPHFSRLVAIEANKACRKNQVKEVIVTGWGDNTSQFSVLPALQIWAELAYRNDLK--KVSEHFLVSTGLDFDDFMKDLA- | |||||||||||||
4 | 1gqiA | 0.11 | 0.11 | 3.81 | 0.97 | MUSTER | VNADPRVLSDQFLQKI-----ALADGRAFGDVDTADPLDPRVQQWWKTRAQKIYSYIPDFGGFLVKADSEGQPGPQGYGR-----------DHAEGANMLAAALKPFGGVVFWRAFVYHPDIEEFMPLDGKFADNVILQIKNGPIDFQPREPFSALFAGMSRTNQITQEYFGFATHLAYQGLFEESLKTETHARGSTIGNILEGKVFKTRHTGMAGVINPGTDRNTGHPFVQSSWYAFGRMAWDHQISAATAADEWLRMTFSNQPAFIEPVKQ | |||||||||||||
5 | 5ac4A | 0.08 | 0.07 | 2.75 | 1.59 | CNFpred | AHLSAFVK----GVKEVQELRDV--------EDILLIGEEKVYDLIDGMFATLSKL--KTRKVNIGMDQAHLVGLGRYLILNGV--VDRSLLMCQHLERVLDIADKY--GFHCQMWSDMFFKLMEIPEETRLKDRVTLVYWDYYQD---------------SEEKYNRNFRNHHKISHDLAFAGGAWKWIGFTPHNHSRLVAIEANKACRANQIKEVIVTGWGDNGGETSILPSLQIWAELSYRNDL---DGLSAHFKTNTGLTVEDFMQIDL | |||||||||||||
6 | 2epoA | 0.09 | 0.08 | 2.93 | 1.39 | HHsearch-2 | AHLSAFV--------KWGIKEELRDV-----EDILLIGEEKVYDLIEGMFQTMAH-LH-TRKINIGMDEAHLVGLGRYLIKHGFQ--NRSLLMCQHLERVLDIADKYGFNCQM--WSD--MFFKLMEETLRLKERVTLVYWDYY------QDS---------EEKYNRNFQNHHKISQDIAFAGGAWKWIG-FTPHFSRLVAIEANKACRKNQVKEVIVTGWGDNGSQFSVLPALQIWAELAYRNDLK--KVSEHFLVS-TGLDFDDMKDLAN | |||||||||||||
7 | 2epoA1 | 0.07 | 0.05 | 2.32 | 0.83 | Neff-PPAS | ----------LSAFVKWGIKEVQELRDVE---DILLIGEEKVYDLIEGMFQTMAH--LHTRKINIGMDEAHLVGLGRYLIKHG--FQNRSLLMCQHLERVLDIADKYGFNCQMWSDMFFKLMSADGQYDRDVEERVTLVYWDY---------------YQDSEEKYNRNFQNHHKISQDIAFAGGAWKWIGTPHNHFSRLVAIEANKACRKNQVKEVIVTGNGGETSQFSVLPALQIWAELAYRNDLKVSEHFLVSTGL-------------- | |||||||||||||
8 | 1gqiA | 0.13 | 0.12 | 4.16 | 2.03 | HHsearch | NVNAPRVLS-DQFLQKIAALADARYGIKMGDVDTADPLDPRVQQWWKTRAQKIYSYIPDFGGFLVKADSEGQPGPQGYGRDH-----------AEGANMLAAALKPFGGVVFWRAFVYHPDIEEFMPLDGKFADNVILQIKNGPIDFQPRE---------PFSALF-AGMS---RTMMEFQITEYFGFATHYQGPL--FEEIGNILEKTRHTGMAGVINPGTDRWTGHPFVQSSWYAFGRMAWDHQISAATAADEWLRMTFSNQPAFIEPVK- | |||||||||||||
9 | 5a6aA1 | 0.07 | 0.06 | 2.48 | 1.00 | PROSPECTOR2 | TGLSLKQVLNVASAKQVKEVQELRDV-----EDILLIGEEKVYDLIDGMFATL--SKLKTRKVNIGMDEAHLVGLGRYLILN--GVVDRSLLMCQHLERVLDIADKYGFHCQMMFFKLMSADGQYDRDVEIPKDRVTLVYWDYY---------------QDSEEKYNRNFRNHHKISHDLAFAGGAWKWIGFTPHNHFSRLAIEANKACRANQIKEVIVGDNGGETAQFSILPSLQIWAELSYRNDLD---GLSAHFKTNTGLTVEDFMQIDL | |||||||||||||
10 | 1gqiA | 0.13 | 0.10 | 3.56 | 1.60 | SAM | --------------------------------DTADPLDPRVQQWWKTRAQKIYSYIPDFGGFLVKADSEGQPGPQ-----------GYGRDHAEGANMLAAALKPFGGVVFWRAFVY--HPDEFMPLDGKFADNVILQIKNGPIDFQPRE---------PFSALF-AGMSRTNM-MMEFQITEYFGFATHYQGPLFIGNILEGKVFKTRHTGMAGVINPGTDRWTGHPFVQSSWYAFGRMAWDHQISAATAADEWLRMTFSNQPAFIEPVKQ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |