>PF16061 (253 residues) CLNQQSTQQFIYSLYTDIALTELKGYTMMEFSWMMLRVYGKGNFTQEAELMRNDYEKRTE KTVRLLREVMQRAERIVWRCDPEQYVKGKTYEEVTRLIQGYIENEVDMNYNRECWKTCDD YERTKNEGCFKDKFCARQERCSGHIHNCRYVDSDMTICPSARDSVRRYEFIEYENGVTLG KASNCPRGKTAVDSWWRYLFWHCTYCFCLCDDQYSTKTDRYFNLRETLSNINDNKVVTGL RFTKKNRVFHLQI |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | CLNQQSTQQFIYSLYTDIALTELKGYTMMEFSWMMLRVYGKGNFTQEAELMRNDYEKRTEKTVRLLREVMQRAERIVWRCDPEQYVKGKTYEEVTRLIQGYIENEVDMNYNRECWKTCDDYERTKNEGCFKDKFCARQERCSGHIHNCRYVDSDMTICPSARDSVRRYEFIEYENGVTLGKASNCPRGKTAVDSWWRYLFWHCTYCFCLCDDQYSTKTDRYFNLRETLSNINDNKVVTGLRFTKKNRVFHLQI | |||||||||||||||||||
1 | 3v0aB | 0.10 | 0.09 | 3.53 | 0.88 | SPARKS-K | KIYYNFLDQWWTQYYSQYFDLICMAKRSVLAQETLIKRIIQKKMNLTTTNTLRDISNESQIAMNNVDSFLNNAAICVFESNI--------YPKFISFMEQCIINIKTKEKCTNINEDEEFLNIQNMKSLFSSETAEETWPYELVLYAFKEPGNNVIGDASGKNTSIEYSGLVYNSDALYLNGSNQS-ISFSNDFFENGLTNSFSIYFWLRNLGKDTIKSKLIGSKEWEIYFQDTGLVFNMILVSNNSWHYITI | |||||||||||||
2 | 6ei6A | 0.10 | 0.08 | 2.94 | 0.72 | FFAS-3D | CDPTDDICEIGVRMEEQLAK-------QLMMCKNTRDHHKAMGDVAGMNRFEN-LALTVQKDLDLVRYSKRKNEPL-----PKFHYEKRSFNIVHSELEIVVVRGISYNVAN--PKDVDTY-------------------VRVEFPLLNDESFKTKTNVIRDTSSPDYERFKVD----------IQRTNRQFQRIFKRHGVK----FEIYSRGGFLRSDTLIGTVNVKLQETKCEIHDTYDLMDGRKKLEVKI | |||||||||||||
3 | 6btmB | 0.17 | 0.09 | 3.13 | 0.38 | HHpred | ------------------------------------------------------------------------TTVDLWESFRTGFVRDMHWLRIDRYYSSESTMEVAFQPHAPCETVCPVAATSHGR----QGQNHAYNRCVGTRY-----------CANNPYKVRRFNWFLYNKNSEFDYDRMVLNPDVNVRS--RGVMEKCSFCICACSAACSSGAMVFGDVNDKESEVAK-------------------- | |||||||||||||
4 | 3btaA | 0.10 | 0.10 | 3.63 | 0.77 | MUSTER | SKLNESINKAMININKFLNQCSVSYLMNSMIPYGVKRLE---DFDASLKDALLKYIYDNRGTLDRLKDKVNNTLSTDIPFQLSKYVDNQRLLSTFTEYIKNIINTSILNLRYESNHLIDLSRYASKINIGSKVNFDPIDKNQIQLFN--LESSKIEVILKNAIYNSMYFWIRIPKYF---NSISLNNEYTIINCMWKVSLNYGEIIWTLQD-TQEIKQRVVFKYSQMINISDINRWIFVTITNNRLNNSKIYI | |||||||||||||
5 | 5a6bA | 0.08 | 0.02 | 0.79 | 0.53 | CNFpred | --------AYLFETQAQLNAILSSKVDVGRRIRQAYQADDKESLQQIARQELPELRSQIEDFHALFSHQWLKE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
6 | 2pffA1 | 0.16 | 0.12 | 4.09 | 0.70 | HHsearch-2 | VPFNQGSKQDVEALIEFIYDTEKNGDAIIPFAAIPEQGIELDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRQVILPMSPNHTFGGMYSESKTLFNRW-HSESWANQLT----VCGAIIGW--------TRGTGLMSANNIIAEGREMPEVVELCQKSPVM---A---DL-NGGL----QFVP--------------ELKEFTAKLRKELVTSEVRKAVSIETA----LEHKVVNGN------------- | |||||||||||||
7 | 6f9gA | 0.06 | 0.05 | 2.26 | 0.98 | Neff-PPAS | -SARQRLQAHAETQALRIQRYFMDAYQYGNGFARLVQVLKDRGGSDLRAELTRQARASLAGNPDVIGLYLVFQPNALDQQDSHYLGQDAMGSNESGRFSLYWSQPSP----GTLELEAMPETMLGDTSIGSNGAAKTARTCMLEPYLDEVNGRQVLMTSIDLFDGQGQVSIATAAGLLAGNSRDDSVLGKPM--------------------DKSVADGLLRVAHPFTPIPDTAPWQVVLELPES-------- | |||||||||||||
8 | 2pffA1 | 0.13 | 0.04 | 1.38 | 0.86 | HHsearch | GVRTFSQKEMAFN---LLGLLTPEVVELCQKSPVMAD-LNGLQFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVV------NGN-------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 4qanA2 | 0.10 | 0.07 | 2.47 | 0.66 | SP3 | PISEKTPQRAVEQFIYAIEKGD---------LTRALAFATTES----SQDTSPELLKKQGEYAKELKTLYGFLGTE------DARLYGKSEEQLNKL-------RGKLNPEYV------YLDLIKVIPIETEENTETVKQYALYSYNGKNYLTGYTLCRQEDG-----WQIQSLSAPALSESGEVRLSKEESRKTSEQSVLKA-------------------------------------------------- | |||||||||||||
10 | 5b5kA | 0.14 | 0.11 | 3.92 | 0.93 | PROSPECTOR2 | CIKDQFVTDALKTFENTYLNDHLPHDIHKNVMRMVNHEVGVVTSAEDSYLDENTLEQATWSFLKDLKRITDSDLK-------GELFIKELLWMLRHQKDIFNNLARQFQKEVLCPNKC--------------------GVMSQTLIWCLKCEKQLHICRKSLDCGERHIEVHRSEDLVL----DCLL------SWHRASKGLTDYSFYRVWENSSKGKEPYLTKSMVVLDTINQGHATVIRY-------DVTV | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |