>PF16006 (295 residues) GGKIPRYTRLNQSGKTGIKPTTPNFKKLHEAHFKKMESIDLYIKRKQNRIEAFNNSVKEV KVLAENANLLKPIQKTEGSNTTKLGSAAMTMFSPPSQRGRRFTVCTPGNLRQSPRISMSA NKNILRETDKFKPTVLSTTKMNVRFSEATRDNEHKCSLFKTPARMSPYADLPNTPGTEES KLKKTEEKSAKKCPTSITPLALPNSETPGRKKNAFDLKASLARPLGYQPHKGKLKPWGDS TENATALNKSLGASYDSLKKNYKQPRLQTREERRQKHNEYRQQKKENAIAAKRGL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | GGKIPRYTRLNQSGKTGIKPTTPNFKKLHEAHFKKMESIDLYIKRKQNRIEAFNNSVKEVKVLAENANLLKPIQKTEGSNTTKLGSAAMTMFSPPSQRGRRFTVCTPGNLRQSPRISMSANKNILRETDKFKPTVLSTTKMNVRFSEATRDNEHKCSLFKTPARMSPYADLPNTPGTEESKLKKTEEKSAKKCPTSITPLALPNSETPGRKKNAFDLKASLARPLGYQPHKGKLKPWGDSTENATALNKSLGASYDSLKKNYKQPRLQTREERRQKHNEYRQQKKENAIAAKRGL | |||||||||||||||||||
1 | 5yfpB | 0.10 | 0.09 | 3.42 | 1.54 | SPARKS-K | TYKDLIWNSLINSNFNI--------DQPQETILSLFSKILRWMSIKMNGFQNELNELSGHMISKIIHSQRLILQNNTNQDKSQGCVELSYYLKINKDSEGLKSTVEPNKVNTISTSYLNLNCQPSSQGLTDSPTIIEMWLLILKYINDLWKICDQFIEFTYQNSIINEKRKENILIGDSNIIESYQKSLILKEQNLISFFTSSQSSLPSSLKTRSNKDSGSPLDYGFIP------PNCNGLSCLRYLPKIVEPILKFSTEAQLNITTNGITICRNTLSTIINRCVGAISSTKLRD | |||||||||||||
2 | 2tmaA | 0.10 | 0.09 | 3.51 | 2.30 | Neff-PPAS | --KMQMLKLDKENALDRAEQAEADKKAA-EDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQK------------EDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISE--ELDHALNDMTSI | |||||||||||||
3 | 5gaoE | 0.07 | 0.06 | 2.60 | 1.29 | PROSPECTOR2 | A---------------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARAAAAAAAAAAAAAAAAAAAAAAATTKEAYKKLSQKFHGTKS-------NKK | |||||||||||||
4 | 6em5n | 0.12 | 0.11 | 3.99 | 1.45 | SPARKS-K | KGIYPREPRNKKKANKGSTAPTTFYQYLHEPVLAKFREHKTFARKLTRALGRFPDAIRDIDDALNMLFLFSNLPSTNQVSSKLAYVAKERLVRKVFVSIKGVYYQANIKGEEVRWLVPFKFPENIPSDVDFRFLEFYSTLLHFVLYKLYTDSGLIYPPKLDLKKDKIISGLSSYILESRYDSPVASLFSA---------FVFYVSREVPIDILEFLILSCVDRPVLKNKVAGRIQPWIFDCINKGELVPLPGEALPPHLSPWEEKKLKMKLYKKMKYSNAKKEEQAENLKKKKKQ | |||||||||||||
5 | 6em5n | 0.13 | 0.12 | 4.14 | 0.66 | FFAS-3D | -GIYPREPRNKKKANKGSTAPTKDIQYLHEPVLAKFREHKTFARKLTRALGRFPDAIRDIDDALNMLFLFSNLPSTNERLVRKVFVSIKGVYYQANIKGEEVRWLVPFKFPENIPSDVDFRTDSGLIYPPKLDLKKDKIISGLSSYILESRYDSPVASLFSAFVFYVSREVPIDILEFLILSCGGNVISEAAMDSKVTHQIVDRPVLKNKVAGIFDINKGELVPANYPPH---LSPWEEKKLKMIMMSN-------KQKKLYKK--MKYSNAKKEEQAENLKKKKKQI------- | |||||||||||||
6 | 3i6xA | 0.17 | 0.05 | 1.78 | 0.37 | HHpred | GEDLPPTTELEEGLRNGFSPKVVSLKKIYDLHFRHTDNVIQWLNAMDE-IGLPKIFYPETTDIYDRKNMPRCIY-CIHA-LSLYL-FKLG-LAPQIQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
7 | 2dp5A | 0.12 | 0.11 | 3.98 | 0.97 | MUSTER | DTGFARAGDGHNRFSDLGYISPLDYNLLTNKP--NIDGLATKVETAQKLQQKADKETVYTKAESKQELDKKLNLKGPAATVAYSSSTGGAVNIDLSTRGAGVVVYSDNDTSDGPLMSLRTGKETFNQSALFVDYKGTTNAVNIAMRHATTPNFSSANITSGNENGSAMQLRGSEKALGTLKITHENPSIGADYDKNAAALPLDLSKRQNGAGTA-------AQGIYINSTSGTTGKLSDDK-KSDGGFYAKETSQIDGNLKLKDPTANDHAATKAYVDKAISELKKLILKKH--- | |||||||||||||
8 | 5i6rA | 0.11 | 0.02 | 0.85 | 0.40 | CNFpred | ---IPRFVQVSEDSGRLFK----KSKEVGQQLQDDLMKVLNELYSVMKTYHMYNADSISAQSKLKEAEK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 4oogA | 0.15 | 0.02 | 0.68 | 0.61 | HHsearch-2 | LKKDAILTEITDYEEFDTEQKQPILQEISKADMEKLEKLE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 3tnfB | 0.09 | 0.09 | 3.38 | 2.18 | Neff-PPAS | EKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKRKEKSFFNEKGEEVTSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKIQGEDWESIKDSPEKQKKAEHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIEIANNI | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |