>PF15972 (273 residues) QKRHNLGNFRQRFQRELNGSITRVDWENTCGGNWTGPEDWVRPAKRCKKRQLVIHALQNH TRSELRSLRAENKDTATTKAIDISQQRKWALHSGTYKFLPRLNASSHQLNLRHVHRDLQF YVGAFSYLRHAQLHWDYSNTQTESVMSAELGRLRKSARRVLCSVEVAINATNRLYASKGQ KNNRRAVPLLHSKILSRELMEKRLQQFKTPLVQLHHEAALAARSLPAEQPTQSVQLAVDA RFVKFEYVQYLNNAWKILARQRKQLCRNQRQRQ |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | QKRHNLGNFRQRFQRELNGSITRVDWENTCGGNWTGPEDWVRPAKRCKKRQLVIHALQNHTRSELRSLRAENKDTATTKAIDISQQRKWALHSGTYKFLPRLNASSHQLNLRHVHRDLQFYVGAFSYLRHAQLHWDYSNTQTESVMSAELGRLRKSARRVLCSVEVAINATNRLYASKGQKNNRRAVPLLHSKILSRELMEKRLQQFKTPLVQLHHEAALAARSLPAEQPTQSVQLAVDARFVKFEYVQYLNNAWKILARQRKQLCRNQRQRQ | |||||||||||||||||||
1 | 4e40A | 0.07 | 0.06 | 2.53 | 0.75 | SPARKS-K | -------------------------------GEIKVELEDSDDVAAACELRAQLAGVSIASGILLRPAVIRNATTEDILAKGGAAVERASAAVDRVS---GLKTNETAQKVRKAAAVAHHALEHVKEEVEIVAKKVNEIIELTAGATEHAKGAKANGDASAVKVSNLLARAKESENQYVKEAAEECSES-TNYDVTAKSLAAALDKLEDNAVKTTFQSILTSLDNLDKDVKSVEQRAEELETALEKAERQLEKAEKAAEEAETESSKV----- | |||||||||||||
2 | 4mhlA | 0.21 | 0.12 | 3.74 | 1.12 | FFAS-3D | -----------------------------------------DPRAELDSTVLLTRSLLADTRQLAAQLRDKFPADGD----------------HNLDSLPTLGALQLPGVLTRLRADLLSYLRHVQWLRRA-------GGSSLKTLEPELGTLQARLDRLLRRLQLLMSRLALPQDP----------PAPPLAPPSSAWGGIRA-----------------------------------AHAILGGLHLTLDWAVRGLLLLKTRL-------- | |||||||||||||
3 | 2q7nB | 0.08 | 0.05 | 2.03 | 0.35 | HHpred | ----------------------SPLPITPVNATCAIRHPCH--NNLMNQIRSQLAQLNGSANALFILYYT-------AQGEPFPNLDKL--CGPNVTDFPPFHANGEKAKLVELYRIVVYLGTSL-----GNITRDQKILNPALSLHSKLNATADILRGLLSNVLCRLCSKY-HVGHVDV-------TYGP-DTSGKDVFQKKKL---------------------------------GCQLL-GKYKQIIAVLAQAF--------------- | |||||||||||||
4 | 5yfpB | 0.09 | 0.09 | 3.46 | 0.80 | MUSTER | IEKFLDGTYQNSIINEKRKENILIGDSNIIESYQKSLILKEEQINEVRLGEEFITSVSQNLISFFTSSQSSLPSSLKDSTGDITRSNKDSGSPLDYGFIPNCNGLSCLRYLPKIVEPILKFSTELAQLNITTNGITICRNTLSTIINRCVGAISSTKLRDISNF--YQLENWQVYETVTFSSKSQDSSKNLTFEYGVTQFPEIVTSFQ--EVSIKTTRDLLFAYEKLPIINGISVVSYSKQLLTGIEIQQIISMEAVLEAILKNAAKDKDNPR | |||||||||||||
5 | 4iggA | 0.09 | 0.07 | 2.51 | 0.77 | CNFpred | -------QALQDLLSEYMGNA-------------GRKERSDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDSFLE----NVPLLVLIEAAKN---------GNEKEVKEYAQVFREHANKLIEVANLACSIS----------NEEGVKLVRMSASQLEALCPQVINAALALAAK---------------------QSKLAQENMDLFKQWEKQVRVLTDAVDDI----------SIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAI | |||||||||||||
6 | 1vt4I3 | 0.12 | 0.07 | 2.44 | 0.61 | HHsearch-2 | -----EYALHRSIVDHYN----IPKTFDS------DDLIPPYLD-QYFY-SHIGHHLKNIEHPERMT----------LFRMVFLDFRFLEQKIRHDAWNASGSIL---N-------TLQQLK--F-------YKPYICDN---D---PKYERL---VNAILDFLPKIEENL--IC---------------------------------SKYTDLLRIA---LMA------------EDEAIFEE----------------AHKQVQRGGGGGG | |||||||||||||
7 | 5nnvA | 0.09 | 0.08 | 2.91 | 0.99 | Neff-PPAS | -------------------------------------------KEEELAESSAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKEVL-KERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSESSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEKRLYKQKTTLL-- | |||||||||||||
8 | 2q7nB | 0.08 | 0.05 | 2.03 | 0.57 | HHsearch | ----------------------SPLPITPVNATCAIRHPCH--NNLMNQIRSQLAQLNGSANALFILYYT-------AQGEPFPNLDKL--CGPNVTDFPPFHANGEKAKLVELYRIVVYLGTSL-----GNITRDQKILNPALSLHSKLNATADILRGLLSNVLCRLCSKY-HVGHVDV-------TYGP-DTSGKDVFQKKKL---------------------------------GCQLL-GKYKQIIAVLAQAF--------------- | |||||||||||||
9 | 1st6A | 0.12 | 0.11 | 4.03 | 0.69 | SP3 | QGIEEALKNRNFTVEKMSAEINEI--------IRVLQLTSWDEDAWASKDTEAMKRALALIDSKMNQAKGWLRDPNAPPGDAGEQAIRQILDEAGK--AGELCAGKERREILGTCKTLGQMTDQLADLRARGQGATPMAMQKAQQVSQGLDLLTAKVENAARKLEAMTNSKQAIAKKIDAAQNWLADPNGGSEGEEMSEARKVAELCEEPDILRSLGEISALTAKLSDLRRHGKGDSPEARALAKQIATSLQNLQSKTNRAVANTRPVKAAVH | |||||||||||||
10 | 4m0mA2 | 0.11 | 0.10 | 3.67 | 0.87 | PROSPECTOR2 | DRLSYLQHSLTSIANYYHYHCDEKS--------------------------STNESVKNLLLERVKESRTKPDSEAIKHLEQTDEVRQILESKNEKGFLWNHISPNARQYCEQVKAALREHLEHNQVLSDTQKEEDNIVNDSSKDSQQKYREIRREVIELNAKADNQLTRSHFQKAYFEGDTQKTLNSKAHYGETSTDKITQRLDGYKNRNWFWNSVKEVLNFFNIPLPKLHSEVKEQIADKLKERLVDLVNAITRELGKAREDLIEHYKKRK | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |