>PF15424 (264 residues) APLIPQRLMSASNSNELLLSLNNAQLQPLQLQGPFNSWIPPFSGILQQQQQAQIPGLSQF SLSALDRFAGLFPNQIPFPGQVSFVQGTQVGQQDPSQPQTPPQTQQGPNHVMPYVFSFKM PQEQAQMLQYYPVYMLLPWEQSQQTATQSPPQTGQQQFEEQMPFYTQFGYIPVQAEPVMP GGQQQLALDPLLGTAPETVVMPGGGVIPYLQKEVINFKHAKGGIFIPSTSQKPSTTNSFA PAIDPTITPELMEKKAKTDYLKEP |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | APLIPQRLMSASNSNELLLSLNNAQLQPLQLQGPFNSWIPPFSGILQQQQQAQIPGLSQFSLSALDRFAGLFPNQIPFPGQVSFVQGTQVGQQDPSQPQTPPQTQQGPNHVMPYVFSFKMPQEQAQMLQYYPVYMLLPWEQSQQTATQSPPQTGQQQFEEQMPFYTQFGYIPVQAEPVMPGGQQQLALDPLLGTAPETVVMPGGGVIPYLQKEVINFKHAKGGIFIPSTSQKPSTTNSFAPAIDPTITPELMEKKAKTDYLKEP | |||||||||||||||||||
1 | 3cnfT | 0.09 | 0.09 | 3.32 | 1.46 | Neff-PPAS | SINNDTRVALDPKPNQI----RTITSHTLRLLGPFQYFNFPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLLHVRSYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGID----YIDIPSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWDVLHTFHYRSESDMIDHFAAKIEDWRQKEKLDKGALVEADRVVQRLIPLSSSTYVQRLAAISRLSTALLQLSDTYYQHANDQLRRLMTQRHQELLLAQITADPN | |||||||||||||
2 | 2nbiA1 | 0.11 | 0.11 | 4.07 | 1.07 | PROSPECTOR2 | QPSDLNPSSQPSECADVLIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQLDCTDPAVNRCPACCAFECRPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSDCFLPKSDSARPPDCTAVGRAPSSAPTR | |||||||||||||
3 | 5fvmC | 0.08 | 0.07 | 2.90 | 0.88 | SPARKS-K | -----VILASAGYDHTIRFEALTGVCRTIQHASQVNRLITSDKKYLAAAGHLHVSNNPN-PVSSFEGHKGNVTSIAFQQENRWMVSSSEDGTIKRSPSVQRNYKHNAP------VNEVAIHPNQGELISCDQDGNIRIWDLGENQCTNQLTPEDNTPLGSMLVAGNNKGNCMPHHTDASTLEPVTKFKSHTKYLSADVKNLADHTARVWNIEDQLETTLDGHQRWVWDCAFSADSAYLVTACSDHYVRLWDLSTSEIVRQYGGH | |||||||||||||
4 | 1d3e3 | 0.10 | 0.08 | 2.92 | 0.40 | FFAS-3D | ---LPVYVTPGSGQ---FMTTDDMQSPCALPW-------------YHPTKEIFIPGEVKNLIEMCQVDTLIPINSTQSNITVTLSPQTKLAEEIFAIKVDIASHPLATTLI----------GEIASYFTHWTLLAYTPPKEAMLGTHVVWDVGLQSTVSLVVPWISASQYRFTTPDTYSSAGYITCWYQTNFVVPPNT---PNTAEMLCFVSGCKDFC-----LRMARDTDLHKQTGPITQ----------------------- | |||||||||||||
5 | 5xxzA | 0.11 | 0.11 | 4.07 | 0.98 | MUSTER | IAKLGDHLPQTLGKTPIKLKLTDGNYQTKETLKDNLETQSDTGLVTNQAQLAVVHRNQPQSQLTKNQDFFISPNEDGFVAFKGLENNVYAKDDHQKQTPIWSSQAGAGASAIESTAWYGITARGSKVPGDYQYVVTYRDEHGKEHQKQYTISVNDKKPITQGRFDTINGVDPDKTKALGSSGIVREEVFYLAKKNGRKFDVTEGKDGITVSDNKVYIPKNPDGSYTISKRDGVTLSDYYDRAGNVSFATLRDLKAVGKDKLDLP | |||||||||||||
6 | 4pokA | 0.09 | 0.02 | 0.71 | 0.43 | CNFpred | -------------------------------------------------------------------------------------------------------------NVIFLEVDVDDCQDVASEVKCMPTFQFFKKGQKVGEFSGANKKKLEATINKLV------------------------------------------------------------------------------------------------------ | |||||||||||||
7 | 2pffB | 0.22 | 0.20 | 6.32 | 0.58 | HHsearch-2 | KNYITARIMKKSNSALFRAVEGNAQLVAI-FGGQGNTYFEELRDLYQT-YHVLVGDLIKFSAETLSELIRTTLDA-----EKVFTQGLN--IL--EWLENPSNTPDKD-----YLLSIPISCPLVIQLAHYVVTAFTPGEHSQGLVTTSLPPSISNLTQEQVNKTNSHLPAGKQVEISLVNGAKNLNLTLRKAKAPSGLD---QSRIPFSERKL-----KFSNRFLPVASPFHSHL--LVPASDLINKDLSISERIVDCIIRLP | |||||||||||||
8 | 2cseH | 0.13 | 0.12 | 4.34 | 1.39 | Neff-PPAS | LKHLPHHRCNQQIRHQDYVDVQFADRVTAHWKRGMLSFVCQMHAMMNDVSPEDLDRVRTEGGSLVENWLQVDPNSMFRSIHSSWTDPLQVVDDLDTKLDTALNLMIDSSDLVPN-FMMRDPSHAFNGVR-------LEGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRKESHYSRATTPILGKMPMYPFIKGTAKLKTVRKLVDSVNHAWGVEKIRYALGPGGMTGWYNRTMQQPAALTMFSDTTKFGDLDYP | |||||||||||||
9 | 4doxA | 0.14 | 0.07 | 2.32 | 0.38 | HHsearch | ---------------------------------------------------------IAFPAITQEQMSSIKVDPTPSQEQLKSSTLMVAAKVPAASVGSSAYT--TVTGPSSIP---EISLAQRKCRYFAPILRT---------------------D-KMAPANWASGYKP---------SAKFAAFDFFDGVENPAAMQPPSGLTRSPQEERIANATN-------------------------------------------- | |||||||||||||
10 | 5lqwQ | 0.10 | 0.09 | 3.39 | 0.62 | SP3 | NQLLPNAACHSRKSWKAIKIVQQGILLGIGVLNHLTGLMSCIKDCLMDHVPVRIVTAENSYPYGIEVFNVVLEPLWKGIRSHVLSSFLKAVG-SMIPLMDPEYAGYYTTEAMRIIRRFDSDEMKKTILL------VL------QKCSAVESITPKFLREEIAPEFFQKFWVRRVALDRPLNKVVTYTTVTLAKKLGSYTI---DKLLTPLRDEAEPFRTMAVHAVTRTVNLLGTAD--LDERLETRLIDALLIAFQEQTNSDSI | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |