>PF15290 (300 residues) NQQSPVNVHPNYGPSSPSSSNSGSYKGSDSSPIMRRPGRYMSCGENHGVKPPNPEQYLTP LQQKEVTVRHLKTKLKESESRLQERETEIAELKSQLARMREDWIEEECHRVEAQLALKEA RKEIKQLKQVIETMRSSLADKDKGIQKYFVDINIQNKKLESLLQSMEMAQNGSLRDEQCL DYLCDSPEKSLPPNTAYGKMADARALEDQTIEEGAESELLAIENVENSTDLFEEIMMATT TEAGDLSLLHSTSISSPFKTKAFEMGPVTQEEDSMVTEQAIQTDVVPYSPDVEQLIQNML |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | NQQSPVNVHPNYGPSSPSSSNSGSYKGSDSSPIMRRPGRYMSCGENHGVKPPNPEQYLTPLQQKEVTVRHLKTKLKESESRLQERETEIAELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLADKDKGIQKYFVDINIQNKKLESLLQSMEMAQNGSLRDEQCLDYLCDSPEKSLPPNTAYGKMADARALEDQTIEEGAESELLAIENVENSTDLFEEIMMATTTEAGDLSLLHSTSISSPFKTKAFEMGPVTQEEDSMVTEQAIQTDVVPYSPDVEQLIQNML | |||||||||||||||||||
1 | 2tmaA | 0.12 | 0.12 | 4.09 | 1.98 | Neff-PPAS | -----DAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDEL-------VSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI----- | |||||||||||||
2 | 5nnvA | 0.10 | 0.07 | 2.61 | 1.04 | PROSPECTOR2 | AKEEELAESSA-------------------------------------------------ISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETL-------QAEVKQLRAQVKEKQQL---------------------------SNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSESSSTSGEEKLEEAAKHKLNDKTKTIELQHGLDTYERELKEKRLYKQKLL | |||||||||||||
3 | 5yfpA | 0.08 | 0.08 | 3.04 | 0.90 | SPARKS-K | MSNFSNDIENVESQDNGLQVESANKKLLWNTLDELLKTVSLDEISLNQLLECPIRE--KNLPWMENQLNLLLKAFQAEISGLKQRLQFYEKVTKIFLNRIVEEMQKKFSNIRGQDQMIRILTTLLIFSPLILFCK--EISQKS-----YQAINWNVSIQPVYMELWTKKISQDTNDEKMNELSLSQLLNEWDTFRKERKTNDINPVFKNSFSLCIVYQNFVEVHISSKHNFEEYIKHFNDPDAPPILLDKVMQSDREAAVIETQLVSRIFQPIVTRLSSYFVELVKAVAPALTFYLENEI | |||||||||||||
4 | 3na7A1 | 0.13 | 0.05 | 1.63 | 0.73 | FFAS-3D | ------------------------------------------------------------IREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEK--------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
5 | 2pffA | 0.18 | 0.16 | 5.20 | 0.51 | HHpred | ---------PIYGI--VAMAATATDKIGRSVPAPG-KGILTTAREHHSVKYAS------PNLNMKYRKRQLVTREAQIK---DWVENELEALKLEAEEIPSEFLLE---RT--REIHNEAE---SQLRAAQQQWGNDFYKRDPRIATYGLDLGVANDKNESATINEMMKHLGRSEGNP-VIGVFQ---KFLTMNGALQILNSGIIPGNRNADILEQFEYVLYPSKTLKTDGV-RAVSITSFGFGQKGGQAIVVHPDYLYGAITEVSAREKSAYKFIYNKFVSKEHAPYTDELEEDVYDP- | |||||||||||||
6 | 6fmlG | 0.12 | 0.11 | 3.92 | 0.93 | MUSTER | DTSSPFFCGHFAETGSFLREGTNVALGYSTRSLVEYRLPRLIWCDGGRLDKPGPGN-------LVAGFRSKYLNHMMNIWTPENIRSSLEGIENFTWLRFVDTSLQEAYRASHTDVFARAVDLASKQNRLGHMQIVYDEPEDKKWT--PVHALFQICERENPKAVAEITTEGVLRDLMNIARVKYRELGLCRLEKAARPRASAPPIEVVCDSRSAVIERENIMFHPAMRKALFGPTPSEIKEASFGPRPVTLYPPRALLPAPDHDKQRFTNITVPSMA-----RFVTDSAKLDELLRELK | |||||||||||||
7 | 5xg2A | 0.13 | 0.05 | 1.62 | 0.63 | CNFpred | ---------------------------------------------------------------WGKRKEKLIEEIRAREEERNALVVRLGEIDRTFAVAREEFDTVVKELEEARKSLYEGEARIKRAEEEKERLKAEILTGEARLPGLRERAENLRRLVEEKRAEISELER--------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 6f1tX2 | 0.10 | 0.05 | 1.71 | 0.56 | HHsearch-2 | --------------------------------------------------------------QHIIRLESLQAEIKM-------LSDRKRELEHRLSATLEENDLLQGTVEELQDRVLILERQGHDKDLQLHQSQLELQE-----------VRLSYRQLQGGGGGG---GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---------------------------------------------------------------------------------- | |||||||||||||
9 | 5nnvA | 0.10 | 0.08 | 2.83 | 1.62 | Neff-PPAS | ---------------------------------------------------------KEEELAESSAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQQLSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEKRLYKQKTTLL---------------- | |||||||||||||
10 | 6f1tX2 | 0.13 | 0.06 | 2.18 | 0.90 | HHsearch | -------------------------------------------------------QHIIRLESLQAEIKMLSDRKRELEHRLSATLEENDLLQGTVEELQDLILERQGHDKDLQL--HQSQLELQEVRLSYRQLQGGGGGGGGGG-------------------------GGGGGGGGGGGGGGGGGGGGGG-----G----G--GGGGGGGGGGGGGGGGGGGGGGGGGG-------GG---GG------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |