>PF15239 (287 residues) SDMERIGLFSEMSYVTIGDKYVSHYMRPFNEAASKNKQMLPGGTKTLSALQAGYFEPQFV RIFDGEAYSNPVQLRRRYRLAESKKNLGKAFLPSNGDKLPCGLGSYYGTIGGPYAYFSPQ LKDRERYVPPGKNFYTNPGKKGTGYGYANLTIGEQYPHEPDEYEAERINAKKAQEEHKRL IKGGPFKLNLYPQKYFDTNPYFNDKLLPPVKKPPPEKPIVPPFKPSSPAKKPGGMKGGTF DPYPSHSADPYVIKKSKAVTTDKERQIFHPAPGPKSRPVTSIITLNV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | SDMERIGLFSEMSYVTIGDKYVSHYMRPFNEAASKNKQMLPGGTKTLSALQAGYFEPQFVRIFDGEAYSNPVQLRRRYRLAESKKNLGKAFLPSNGDKLPCGLGSYYGTIGGPYAYFSPQLKDRERYVPPGKNFYTNPGKKGTGYGYANLTIGEQYPHEPDEYEAERINAKKAQEEHKRLIKGGPFKLNLYPQKYFDTNPYFNDKLLPPVKKPPPEKPIVPPFKPSSPAKKPGGMKGGTFDPYPSHSADPYVIKKSKAVTTDKERQIFHPAPGPKSRPVTSIITLNV | |||||||||||||||||||
1 | 6em5m | 0.10 | 0.09 | 3.21 | 1.43 | SPARKS-K | -----------YSKYADGSDRIIKPEINPVYDDAETQN-------TIGNIPLSAYDEMPHYDINGKRIMRPAKGSALDQLLDSIELPEGW----TGLLDKNSGSSLNLTKEELISKIQRNEQTDDSIYEPLIDWFTRHEEVMPLTAVPE----PKRRFVPSKNEAKRVMKIVRAIREPPKKLKEMKEKEKIENYQYDL--WGDSTETNDHVMHLRAP------------KLPPPTNEESYNPPEEYLLSPEEKEAWENTEYSERERNFIPQKYSALRKVPGYGESIR | |||||||||||||
2 | 2atyA | 0.08 | 0.08 | 3.24 | 1.08 | MUSTER | YSTPAVGRYSLIGEKSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVACKTNFSMNGNQANNMWGPTRLPTCVSVFPLEGSIEGRGGELADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDTITLTPKVVVDISKDDPEVFVDDVEVHTAQTQPREEQFNSTFRSVSEMHQDWLNGKEFKNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKQMAKMITDFFP----EDITQWNGQPAENYKNTQPIMNTNESYFVYSKLNVQKS | |||||||||||||
3 | 3cnfT | 0.08 | 0.08 | 3.05 | 2.46 | Neff-PPAS | -TLRLLGPFQNFSETDRGHPFRLPLKYPSKAIPADELIDNLHSWMRSVHLLHVRSEDNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVADIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTVLHTFHYRSESDMIDHFAAKILEDWRQKEKLDKGALVEADRVVQRLIPLSSSTYRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILL-YPYTYIFTTAYTSMNYISNTGQGRIKHSLAVTGTTEHT---IADI | |||||||||||||
4 | 6fmlG | 0.05 | 0.05 | 2.20 | 1.07 | SP3 | PDL-----FERADTSSPFFCGHFAETGSFLREGTNVALGYSTRSLVEYRLPRLIWCDGGRLDKPGPGNLVAGFRSKYLNHIWTPENIRSSLEGIENFTWLRFVDTSLQEAYRASHTDVFARAVDLASKQNRLGHMQIVYDEPEDKKWTPVHALFQICERENPKAVAEITTEGVLRDLMNIARVKYRELGLCRLEKAARPRASAPPIEVVCDSRSAVIERENIMFHPAMRKALFGPTPSEIKEASFGPRPVTLYPPRALLPAPDHDKQ---RFTNITVPSMARFVTDS | |||||||||||||
5 | 2nbiA1 | 0.08 | 0.08 | 3.16 | 1.51 | PROSPECTOR2 | QNCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPDCDVLPTPQNIPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPPKSDSAFPNNIGCPSCCPFECSPDNPMFTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPSSAPTR | |||||||||||||
6 | 5yfpB | 0.08 | 0.07 | 2.76 | 1.43 | SPARKS-K | LKYINDLWKICDQFIEFWEHIEKFLDGTYQNSIINEKRKENILIGDSNII-----ESYQKSLILKEEQINEVRLKGEEFITSVSQNLISFF------------------TSSQSSLPSSLKDSTGDITRSNKDSGSPLDYGFIPPNCNGLSCLRYLNITTNGITICRNTLSTIINRCVGAISSLRDISNFYQLENWQVYETVTFSSKSQDSSK------------NLTFEYGVTQFPEIVTSFQEVSIKTTRDLLFAYEKLPIINGISVVSYPSKQLLTGIEIQQII | |||||||||||||
7 | 4bmlA | 0.07 | 0.07 | 2.87 | 2.45 | Neff-PPAS | TAFNNASIFKG---LVRSYDLRGGKSKQFMFTGKLSAGYHTPGTPIVGDAGIKANEKTLVMDDLLVSSQFVYSLDEIFSQYSTRAEVSKQIGEALATHYDERIARVLAKASAEASPVTGEPGGFHVNIGAGNTNDAQAIVDGFFEAAAVLDERSAPQEGPRQYYSLISSVDTNILNREIGNSQGDMNSGKGLYSIAGIRILKSNNLAGLYGQDLSSAAVTGENNDYQVDASALAGLIFHREAAGCIQSVAPTIQTTSGDFNVQYQGDLKLAMGCGSLRTSVAGSFQA | |||||||||||||
8 | 2nbiA | 0.11 | 0.11 | 3.92 | 1.42 | PROSPECTOR2 | INCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPDCDVLPTPQNRPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSFTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPSSAPTRQPSSQPTGPQPSSQPSECADVLELTE | |||||||||||||
9 | 6f1ti | 0.06 | 0.05 | 2.23 | 1.38 | SPARKS-K | SGKTTLMTKLQHGKKGRGLEYLYLSVHDEDRDDHTRCNVLLKFAVSAESLPETVADMS-----RPWTVMESLQKWASVLREHIDKMKIP---------PEKMRELERKFVKDFQDYMEPEENVLTHNLGIPVLVVCTKCDAVSVLEKEHD-----------YRDEHLDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVH----FTTPALVVEKDAVFIPAGW--DNEKKIAILHENFTTVKPEDAYEDFMKQQSLLAKQ---------------------- | |||||||||||||
10 | 2xd8A | 0.06 | 0.05 | 2.16 | 0.64 | FFAS-3D | --------MANANQVALGR-----------------SNLSTGTGYGGATDKYALYLKLFSGEMF-------------------KGFQHETIARDLVTKRTLKNGKYTGRMTSSFHTPGTPILGNADKAPPVAEKTIVMDDLLISSAFVYDLYELRGEISKKIGYALAEKYDRLIFRSITRGARSASPVSATNFVEPGGTQIRVGSGTNESDAFTASALVNAFYDAADEKGVSSQGRCAVLN--PRQYYALIIGSNGLVNRDVQGSALQSGNGVIEIAGIHIYKSMNI | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |