>PF15122 (296 residues) MGFSRTCLKNVFSVILILIYLLLMAVAVFLAYQTITDFQDKLKHPVMSVTYKEVDSFEAP GIALYPGKAQLLSCKHYFHDHMPPLVKPGQPGEVDCVKDHINYTDPFTNNTMKHALVVQG PTDVRKKELIFLQFSQNETEQDFSAISYLLFYSFKEFKGSQNKAQFMKDCEKSYSVWTFS GGFRTWVKMSLVQTSEKDGSKSVEFRQESSVVKYYDKRLESEKTNQLFFVVFEWRDPFIQ QVRDIITANPWNTIAILCGVFLALFKAADFAKLSVKWMIKIRKRQLKRKARELNQV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | MGFSRTCLKNVFSVILILIYLLLMAVAVFLAYQTITDFQDKLKHPVMSVTYKEVDSFEAPGIALYPGKAQLLSCKHYFHDHMPPLVKPGQPGEVDCVKDHINYTDPFTNNTMKHALVVQGPTDVRKKELIFLQFSQNETEQDFSAISYLLFYSFKEFKGSQNKAQFMKDCEKSYSVWTFSGGFRTWVKMSLVQTSEKDGSKSVEFRQESSVVKYYDKRLESEKTNQLFFVVFEWRDPFIQQVRDIITANPWNTIAILCGVFLALFKAADFAKLSVKWMIKIRKRQLKRKARELNQV | |||||||||||||||||||
1 | 4qanA | 0.09 | 0.07 | 2.84 | 0.62 | SPARKS-K | LQIN---FVKTAEELLIDLYFPLTSAETKAYIEQFEELSTEIPEEVLEIAEKKCGEQSGFTAVQYEKNWKIHSLKEGLLYEIPACVQEEREAKKTYVLPNQLTGANYFQAPISE----KTPQRAVEQFIYAIEKGTTESSQDTSPYAKELKTLYGFLGTEDAREEQLNKLRGKLN------------------PEYVY-------LDLIKVIPIETEENTET--VKQYAGLYSYNGKNYLTGYTLCRQDGWQIQSL----------SAPALE------VRLSKEESRKTSEQSVLK | |||||||||||||
2 | 5lqxG | 0.10 | 0.08 | 3.00 | 0.59 | FFAS-3D | ----ETRLKSIKNIEKITNTMKVVASTRMGRAQRSRAFREGDSDFFATAETSTPETAEKTLIIAVSS-------------------DKGLCGSIHSQIAKATRAKLQETPNADVVTIGKIKAQMLRTHSSNVVLSFNGVGKE-----------------APTFWEASLIADEIRKLGDYDK-----IEVMYNKFVSGVAFEPSVFPSFSPISIEESPKLSEEEDQAIP-------TSLSQITNAILNAMAEGYASEISARRNAMDNASKNAGEMINKYSRTRQAVITNELVDI--- | |||||||||||||
3 | 5fruA | 0.18 | 0.07 | 2.21 | 0.30 | HHpred | ----------------------------------------------------------------------------------------------------------------------------------RLRFAMKEGSAALGALRKELVDTLGGLFMRMGFHSGVRDAELAKTMRSLEMGPEGVVRVTPLTVD------------------I-N------IAAGVYHGEFLWEDSFEGDVHRGVAQAPWMQIGYATGYTSALMGKT---------------------------- | |||||||||||||
4 | 1u6gC | 0.11 | 0.11 | 3.98 | 0.52 | MUSTER | KIDLRPVLGEGVPILASFLQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDEPPLISESDMHVSQMAISFLTT---LAKVYPSSLSKISGSILNELIGLVR-SPLLQGGALSQALVVTGTNNLGYMDLLLTGVYSQTHKQSYYSIAKCVAALTRACPKEG--PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQL-ELKSVILEAFSSPSEEVKSA-LGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSAVGLKPYVENIWALLLKGTRNVVAECLGKL | |||||||||||||
5 | 3ju8A | 0.12 | 0.09 | 3.34 | 0.75 | CNFpred | LEQRIELLERFAATLLARVIGEETGKPLWESATEVTSMVNKVA-GEKSGPATAVLRHKPHGVVAVFG-PYNFPGHLPNGHIVPALL-------------------------AGNCVVFKPSELTPKVAELTLKAWIQ---GLPAGVLNLVQGG----------RETGVALAAHLDGLFFTGSSRTGNLL----HSQFGGQPQKILALEMGG--------------NNPLVVEEVA-DLDAAVYTIIQSAFISAGQRCTCARRLLVPQ---GAWGDALLARLVAVSATLRVGRFDEQ | |||||||||||||
6 | 5tj5A | 0.17 | 0.13 | 4.22 | 0.45 | HHsearch-2 | VLNEKKINGEIFDMAFTGRYIILMKLSILMFIHMTYSYFFSLANHL-----DIIGNFIPGLLFMQGIFGYLSVCIVYVDWLINMFLSPGTID-----------DELYPHQA-----------KVQV-FLLLM---------ALVCIPWLLLVKPLHFIHVIHTIEFCLNCVSHTASY-----LRLWA-LSLAHAQ------------LSSVLW--TMTIQIA---------FGF-RGFVGVFMTVALFAMWFTCAVLV--LMEGTSAM-LHSLRLHWVESMSKPYFEYKDMEV--- | |||||||||||||
7 | 3tnfB | 0.08 | 0.08 | 3.08 | 0.62 | Neff-PPAS | LSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGN------PVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKEKKGEEVTSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKQKKAEHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIEIANNI | |||||||||||||
8 | 5yo8A1 | 0.22 | 0.07 | 2.23 | 0.66 | HHsearch | PELRAQALRKEFHCEGGGIYGLLELIQFIIAYQIMCDYLDNLCDQSDYL--DP-KDFRALLAALTPGEP-----LVNYYQYRIEQEDGGYLHEETCQHILVT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 3nowA | 0.12 | 0.11 | 3.94 | 0.55 | SP3 | EK-DQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQKHENCTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITSSSTIASVCLARIYENMYYDEAKARFTDQ---------IDE-----YIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVA-------REGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVR | |||||||||||||
10 | 3tnfB | 0.07 | 0.07 | 2.87 | 0.87 | PROSPECTOR2 | LDEYEQAIKRAQGKDLEDKYKTYINEKMEAFSKDSEKLTQLMEKHKGDEKLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQ----KGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKGEEVTSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKDGK----------FYLLKQGEDWESEHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIEIANNISK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |