>PF15010 (279 residues) VGDTVAMLPKSRRALTIQEIAALARSSLHGISQVVKDHVTKPTAMAQGRVAHLIEWKGWS KPSDSPAALESAFSSYSDLSEGEQEARFAAGVAEQFAIAEAKLRAWSSVDGDDSTDDSYD EDFAGGADPDLAGQLPLGPHLQDLFTSRRFSRPVRQGSVEPESDCSQTVSPDTLCSSLCS LEDGLLGSPARLTSQLLGDELLLAKLPPSRECAFRSLGPLEAQDSLYNSPLTESCLSPAE EEPDPCKDCQPLCPLPEGSWERQRQASDVASSGVVSLDE |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | VGDTVAMLPKSRRALTIQEIAALARSSLHGISQVVKDHVTKPTAMAQGRVAHLIEWKGWSKPSDSPAALESAFSSYSDLSEGEQEARFAAGVAEQFAIAEAKLRAWSSVDGDDSTDDSYDEDFAGGADPDLAGQLPLGPHLQDLFTSRRFSRPVRQGSVEPESDCSQTVSPDTLCSSLCSLEDGLLGSPARLTSQLLGDELLLAKLPPSRECAFRSLGPLEAQDSLYNSPLTESCLSPAEEEPDPCKDCQPLCPLPEGSWERQRQASDVASSGVVSLDE | |||||||||||||||||||
1 | 3j3iA | 0.11 | 0.10 | 3.63 | 1.22 | SPARKS-K | AVTLNPGLAMDTSCTDLLQEAQIIACSLQ-ENRYFS-RIGLP---TVVSLYDLM------VP-----AFIAQNSALEGARLS-GDLSKAVGRVHQMLGMVAAKDIISATHMQSRTGFNSNSRLVTQMASKLTGIGLFDAPQMRIFSEMDTADYAHLTIFEASVCTDNGPISFLVNGKLLSADRAGYDVLVEELTLANIR---IEHHKMPTGAFTTRWVAAKRDSALRLTPRSRT--AHRVDMVRECDFNPTMNLKRGSGVKSRRRVSEVPLAHVFRSPP | |||||||||||||
2 | 6etxG | 0.11 | 0.11 | 4.10 | 1.07 | MUSTER | FERQETWSPFHISLKPYHISKFIYRHGQIRVFNHSRDRWLRVSPFAPDYIQRSLFHRKGINEESCFSFLRFIDISPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSWGAPEGESHYLRNKDFLLGVNFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAVPLDSYCNDRSAEYERRVLKEGGSLAAKQCLLNGAPELAADWRSQFFPEPAGGLWSIRPQNGWSFIRPGKESLITDSGLYALDV | |||||||||||||
3 | 2tmaA | 0.11 | 0.10 | 3.77 | 1.45 | Neff-PPAS | -LDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQE--KLELAEKKATDAEADVASLNRRIQLVE------EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDL--ERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALND | |||||||||||||
4 | 5gaoE | 0.10 | 0.10 | 3.81 | 1.13 | PROSPECTOR2 | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTKK | |||||||||||||
5 | 5yfpC2 | 0.07 | 0.05 | 2.10 | 1.20 | SPARKS-K | IERLLVAELAEDALCPHLLEIHFLLTSARDFQEQVVVMAKETVMKLFSRLSGIISK------FDKLLDGLTYDIVEMARAEQISLAIRLFKIYDLEEREDLRIEAIRNIIKKKEIEIEKSSIKKLPNSKNTARLQDETPKVIEYPTNKGLYQEIMSGTISTRTAPRGNSISEMFGEMREKYVGDQKFDVLDNMDWIFNEKEHIANCCPPHWNI------------------------------------------------------------------ | |||||||||||||
6 | 3cnfB | 0.09 | 0.09 | 3.37 | 0.46 | FFAS-3D | VRQLRALMPTLSTSQIRHAIERIAQTDYGKLTLRFLGTLTRSLKMQNAQIRRIRPDGTVYDDQIDIEAFRWSRYFLDELITNPRIARRFNGVR----IMYLTDDDPDPDVPEGYVAVQYAHRLFSSSLANKRNRVTYT--------HPPTGMAYPSPTGRPHVHMTINERAGMSKLVADNIIASVIKSNVDILDIEYTAEVMTPSEGYTQHVDAESIMTAPK-GKLFHLQFMDGLLRPEAQPISVARSMRAIVNHNEVDRPREMDTGTLSRNGDLLYSP | |||||||||||||
7 | 3kjxD | 0.16 | 0.13 | 4.17 | 0.31 | HHpred | -----------KRPLTLRDVSEASGVSE-TVSRVLRNRVSDAT---RARVLAAAKELGYV-PNKIAGALASNNLIIPSLSN--VFPEVLTGINQV-----LEDTELQPVVGVTDYLPEKEE-----------------KVLYE-LSWRPSGVIIAGAAGIP--VVE-IDSDGKPVD---A-----VGISHRRAGRE-AQAIL-KA--GYRRIGF-GTKPLDYRFEGFTEVLGKNGVEIEDRKGQALPDLDFLYSND-IAAYLGIDIGQIG---LAGFNN | |||||||||||||
8 | 6d4hA1 | 0.07 | 0.06 | 2.71 | 0.93 | MUSTER | AMFNPQLMKEEGANVLTTEALLQHLDSALQASRVHVYMYNRQWKLEHLCYK----SGELITETGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTAYLLGKPPLRWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATA--PNKNSTKPLDMALVLNGGCHGLSRKYMHWQ--EELIVGGTVKNSTGKLVSAHALQ-TPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRTYVEVVHQSVAQNSTQ-KVLSFTTTTLDD | |||||||||||||
9 | 4pa0A | 0.13 | 0.04 | 1.24 | 0.57 | CNFpred | ------------------ATGALAKAVYERMFNWMVTRINATLETKQQYFIGVLDIAGFEIF---------DFNSFE-----QLCINFTNEKLQQFFNHHMFVLEQEE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 2pffB | 0.17 | 0.16 | 5.32 | 0.35 | HHsearch-2 | QEQFNKILPEPTEADDEPTTAELVGKFLGYVSSLV-----EPSKVGQFLNLCLTEFEPFDKKSNSALAVGNTDDYFEELRDLYQTYHVLVGDLIKFSAE--TLSELTTLDAEKVNSNTPDKDYLLSIPSAKLLGFT-PGELRSYLTGHSQGLVIAETDSWESFFVSVSLPPSILEDSLENNEGVPAGKQVEISLVNGAKN-LVVSGPPQSLYLRKAKAPSGLDQSPFSLKFSNRFLSPFHSVSFNAKDIQIPVTFDGRDCIIRLPVKWETTTQILDFDI | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |