>PF15008 (274 residues) LSESERAGCKDILNLMTTSSILSLCDTITNKLIVVESFTEATDTILSFTKNAEEFLKRKK VQRDLIFKYLVKEGVVMSPNSEKHQLVKRTLELWSSGETDITKRLPQEPNESHQSTVTET SEDRQMKTKEDFNPQALGKQFCQWFFQLLNSQNPSLGQQPQDWGPQHFWPDVKLHLVSCA GSKQREKFLGAELVNLRLLALTKEERLVLSPNLEPYGLNVLASPHGLVLVAVAGTIHRDG VCLGIFEQIFGLISSPLENNRWKIKFVNLKIKGQ |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | LSESERAGCKDILNLMTTSSILSLCDTITNKLIVVESFTEATDTILSFTKNAEEFLKRKKVQRDLIFKYLVKEGVVMSPNSEKHQLVKRTLELWSSGETDITKRLPQEPNESHQSTVTETSEDRQMKTKEDFNPQALGKQFCQWFFQLLNSQNPSLGQQPQDWGPQHFWPDVKLHLVSCAGSKQREKFLGAELVNLRLLALTKEERLVLSPNLEPYGLNVLASPHGLVLVAVAGTIHRDGVCLGIFEQIFGLISSPLENNRWKIKFVNLKIKGQ | |||||||||||||||||||
1 | 1zo2A | 0.22 | 0.10 | 3.11 | 1.01 | FFAS-3D | ------------------------------------------------------------------------------------------------------------------------------SINLNPQFDQIGKQFVQHYYQTFQTNRPAL--------GGLYGPQSMLTW-------EDTQFQGQANIVNKFNSLNFQR-----VQFEITRVDCQPSPNNGSIVFVTGDVRIDDGQPLKFSQVFNLM--PSGNGGFMIFNDLFRL--- | |||||||||||||
2 | 1zo2A | 0.20 | 0.09 | 2.92 | 1.10 | HHpred | ------------------------------------------------------------------------------------------------------------------------------SINLNPQFDQIGKQFVQHYYQTFQTN-R------PALG-GLYGPQSMLTW---E----DTQFQGQANIVNKFNSLNFQR-VQFE--I--TRVDCQPSPNNGSIVFVTGDVRIDDGQPLKFSQVFNLMPSG--NGGFMIFNDLFRLN-- | |||||||||||||
3 | 1zo2A | 0.20 | 0.09 | 2.91 | 1.19 | HHsearch-2 | ------------------------------------------------------------------------------------------------------------------------------SINLNPQFDQIGKQFVQHYYQTFQT-NRP------AL-GGLYGPQSMLTWE-------DTQFQGQANIVNKFNSLNFQQFEI-------TRVDCQPSPNNGSIVFVTGDVRIDDGQPLKFSQVFNLMPSG--NGGFMIFNDLFRLN-- | |||||||||||||
4 | 1m98A | 0.16 | 0.14 | 4.51 | 0.70 | SPARKS-K | LAADVVPATIARFKQLSAEDQLALIWFAYLEMITIAAPENTLQEIRQQTQAMCDLANRTDPNIKLGFWYELGRFAPIPEGYKLSANANAILVTIQGIDPFDTSKLGSYQRVA--EPVVPPQEMSQR---TKVQIEGVTNSTVLQYMDNLNAND---------FDISLFAEDGALQP---PFQKP---IVGKENTLRFFREEC--------QNLKLIPERGVSEPTGYTQIKVTGKVQT--PWFGNIAWRFLLN----PEN--KVFFVAIDLLAS | |||||||||||||
5 | 3q90A | 0.17 | 0.07 | 2.39 | 1.91 | HHsearch | ------------------------------------------------------------------------------------------------------------------------------------SPLLVGREFVRQYYTLLNQA-PD------M--LHRFYGNSSYV---------ADAVYGQKEIHRKVMSQNFHTKI--------RHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQD- | |||||||||||||
6 | 5mz611 | 0.14 | 0.13 | 4.50 | 0.69 | MUSTER | CRSKDREIFASIPAKL-CRAVVCLLDYID--LSDDTLAKEAALRWLMFLGEIEKKLKTWKMDSKDMFSATEFAMNYLKKSEYRVEMLEKLMKLRDKVKSDPTRSFSRYELASLCSTLSNVPVGSALRECEFPDRVSHIQEAALKSDSLVRNRIPGLASSQFDNS-----VNASIWPFLDGHQEDSNYYVHIGSTIAWHFEMRRECALV----NVTTAQTRDSMSAMILNLRVAASFFRVLQTTNTLAYYSSIIEEAGSEKNMRVSCVNL-LSSN | |||||||||||||
7 | 1jkgA | 0.15 | 0.07 | 2.34 | 1.08 | HHpred | ----------------------------------------------------------------------------------------------------------------------------VDFKTYVDQACRAAEEFVNVYYTTMDK-RR------RLL-SRLYMGTATLVW---NG----NAVSGQESLSEFFEMLPSS-------EFQISVVDCQPVHDTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPNTVWKIASDCFRFQDW | |||||||||||||
8 | 2jg4A | 0.08 | 0.07 | 2.60 | 0.69 | CNFpred | --DPLHCNMAYLYLELLKDSLNEYAYAAELLSYDLQNTIYGMYLSVKGYDKQPILL-------KKIIEKMATFEIDE---KRFEIIKEAYMRSLNNFR---------------------------------EQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTL-QLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHT-VRYREVQLPDRGWFVYQQ-NNCGIEIYYQTDMQSTSENMFLELFCQIISEPCEQLGFIVFSGPRRANGI | |||||||||||||
9 | 3q90A | 0.17 | 0.07 | 2.39 | 1.19 | HHsearch-2 | ------------------------------------------------------------------------------------------------------------------------------------SPLLVGREFVRQYYTLLNQA-PD--------MLHRFYGNSSYV---------ADAVYGQKEIHRKVMSQNFHTKI--------RHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDE | |||||||||||||
10 | 3tnfB | 0.07 | 0.07 | 2.97 | 0.84 | Neff-PPAS | ELEKKLDKLERQGKDLEEENLEGFEKLLTDEELSLSEINEKMEAFSKDSEKLTQLMEKHK-GDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSNKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKEKSFFNEKGEGKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGEDWESIKDSPEKQKKAEHDFHKLQY | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |