>PF14944 (245 residues) MNPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYAGPNPAFQPDTRFLHPSC LTKYMLLWTQTIIHCSRKGNFQLPLSRGTSNRNGKVSGAIFRYTPGTPYKVSCSPTSGTV PPYSSSPNPYQTAVYPVRSAYPQQNPYAQQGAYYTQPLYAAPPHVIHHTTVVQPNGMPAT MYPAPIPQPRGNGVAMGMVAGTTMAMSAGTLLTSHYPTPVAPHQVTMPTYRPPGTPTYSY VPPQW |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | MNPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYAGPNPAFQPDTRFLHPSCLTKYMLLWTQTIIHCSRKGNFQLPLSRGTSNRNGKVSGAIFRYTPGTPYKVSCSPTSGTVPPYSSSPNPYQTAVYPVRSAYPQQNPYAQQGAYYTQPLYAAPPHVIHHTTVVQPNGMPATMYPAPIPQPRGNGVAMGMVAGTTMAMSAGTLLTSHYPTPVAPHQVTMPTYRPPGTPTYSYVPPQW | |||||||||||||||||||
1 | 1maeH | 0.08 | 0.08 | 3.20 | 1.40 | Neff-PPAS | -NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTLVGQTSSQISLGHD | |||||||||||||
2 | 4k0mC | 0.08 | 0.07 | 2.54 | 1.20 | PROSPECTOR2 | KVYTIDEAARTAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRV---------------------------------LAIAKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||||||
3 | 4btgA | 0.12 | 0.11 | 4.03 | 0.99 | SPARKS-K | AMSEVSPFKLRPINETTSYIGQTSAIDMGQPSHVVVYEDWQFAKEITAFTPVKLANNSNQEPGISDRMSATLAPIGNTFAVSAFVKNRTAVYEAVSQRGT---VNSNGAEMTLGFPSVVERDYALDRDP-MVAIAALRTGIVDESLEARASNDLKRSMFNYYAAVMHYAVAHNPE---VVVSEHQGVAAEQGSLYLVWNVRTELRIPVG-------YNAITPEPLEAIAYNKPIQPSEVLQAKVL | |||||||||||||
4 | 3j2k7 | 0.15 | 0.14 | 4.70 | 0.49 | FFAS-3D | LDTNQEERDKGKTFETEKKHFTILDAP-GH----KSFVPNMIGGASQAFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERKLVPFLKKVGFNPKKDIHFMPKEQSDFCPWYINLPNFNRSVDGPIR--LPIVDKYKDMGTVVLGKLESGSIF-KGQQLVMMPNKHNVEVLGILSDVAPGENLKIRLKGIEEEEILPGFILCDPSNLCHSGRQIVIIEHKSIICPGYNAV---- | |||||||||||||
5 | 2zxqA | 0.19 | 0.09 | 2.89 | 0.37 | HHpred | --------------------------------------ENNAQGIWP-FVEDNRIHLSELHAPFRAGWDVKKMDDVLDGTWSVKVNGLKGTLVYQTIPQNVKFEAGAKYKVSFDYQSGSD------------------------DIYAGQGEYKLTNLKKALGETGKAEFELTGVN--------------------------------------------------------------------- | |||||||||||||
6 | 5ay6A | 0.11 | 0.11 | 4.09 | 0.89 | MUSTER | VNRSEQPVAAAVSYKVGTAGSPSKTNVVDSATNSHNYDVVYSSTGIANPVSGNNEYLVDIKENGVIVATGKVAYDAATNELVSSTIDYKGASPVTGSMTTTRINAAGTTDLGIVNASGADDAEVVAGKLYDPSTWSMSDYAKDNSKGVKPDFEVQIPLSDSKGGQRTVTLSMLKGPGPNQWYPGDLANNGNGQISTGIIEFTTKLKNTGSLFGTTSPTAITIKSSGYIAPTVTPPAVQPPTPPTW | |||||||||||||
7 | 3t4jA | 0.15 | 0.03 | 1.10 | 0.41 | CNFpred | -------------------------------------------------------------------------------------------------------------------------------------------------------AVLTSPFRLLHLGVVLTFPVYKSSLPEN------PTVEERIAATAGYLGGA---FDVESLVEN------------------------------- | |||||||||||||
8 | 1n7uA1 | 0.35 | 0.08 | 2.44 | 0.73 | HHsearch-2 | -------------------------------------------------------------------------------------------------------------------------------------EIPVEF-------IADPETCPAQP---TTDKVIIRTTDLNPEGSPCA-YEAGIILVRQTSNPMNAVAG-------------------------------------------- | |||||||||||||
9 | 1dgiR | 0.09 | 0.09 | 3.29 | 1.26 | Neff-PPAS | ---VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATL-TCDARSNPEPTGY--NW | |||||||||||||
10 | 3ecqB7 | 0.18 | 0.12 | 4.00 | 0.66 | HHsearch | --------------------FKQ------------DF-ENVAQGIFPFVVEDNRTHLSEKHDPYQRGWNGKKVDDVIEGNWSLKTNGSRRNLVYQTIPQNFRFEAGKTYRVTFEYEAGSDN------------------------TYAGKGEFQEHELPNTSKKAKKATFLVTAE----------------TGDTVGIYSTGNASTSRGYNFTL-TGKLTENLPTVATNYTKES-DALKEVADD- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |