>PF14642 (255 residues) MGDQGPQDRPRSPGMDSKPWYCDKQPSKCFAKRKHRRLRFPPMDPRNRVFVTQGMDDFRY GCPSPEDTLVCRCDEFLLLKISLRGPQADPKSRKKKLRKKAALFSKLSRAKPARKTFVEG VEAQLTAKPPLAMNYNLGEDMPPDLLLQVLKPLDPERKLEDACACEGQGTTTDEPMEPGK YPCREFSPRPPETRVSCLHPEPPKSPVSSLCPEPPETGVSHLRPEPPETQVSSLHLEPPK TGVSSLLPEPPETQV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | MGDQGPQDRPRSPGMDSKPWYCDKQPSKCFAKRKHRRLRFPPMDPRNRVFVTQGMDDFRYGCPSPEDTLVCRCDEFLLLKISLRGPQADPKSRKKKLRKKAALFSKLSRAKPARKTFVEGVEAQLTAKPPLAMNYNLGEDMPPDLLLQVLKPLDPERKLEDACACEGQGTTTDEPMEPGKYPCREFSPRPPETRVSCLHPEPPKSPVSSLCPEPPETGVSHLRPEPPETQVSSLHLEPPKTGVSSLLPEPPETQV | |||||||||||||||||||
1 | 5jcss | 0.06 | 0.05 | 2.29 | 1.33 | SPARKS-K | LISTVRINEDHQKDSSNKIYNLNMIGMRIWNVEEPSEEDLTHILAQKFPILTNLIPKL------IDSYKNYMNTKFISLNKGAHTRVVSVCERLDILFKNNINKPDQLIQSSVYDSIFSEAADCFA-----GAIGEFKAL------EPIIQAIGESLDIAS----SRISLFLTQHVPTLENLDDSIKIGRAVLLKEKLNIQKKSMNSTLFAFTNHSLRLMEQISVCIQMTEPVLLVGETKTTVVQQLAKMLAKKL | |||||||||||||
2 | 2atyA | 0.10 | 0.10 | 3.75 | 1.03 | MUSTER | RLIGEKSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKGSTPYRHGFACKTNFSMNGNKSVWCQANNMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPRDCGCKPCICTVPEVSSVFFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVMHQDWVNSAAFPAPIEKKTKGRPKAPQLYTIPPPKEQMAKDKVSLTFPEDITPAENYKNTQPIMNT | |||||||||||||
3 | 3cnfT | 0.08 | 0.08 | 3.08 | 2.01 | Neff-PPAS | YARSTNYTTPVGQLVVNAPAILNYSN-----PQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWDVLHTFHYRSESDMIDHFAAKILEDWRQKEKLDKGALVEADRVVQRLIPLSSSTYLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYPYIFTTAYTSMNYISNTGQGRIKHSLAVTGTTEHTIADIT---- | |||||||||||||
4 | 2nbiA1 | 0.13 | 0.13 | 4.36 | 1.29 | PROSPECTOR2 | QPSDLNPSSQPSECADVLPYSDASRPPSCLSFGRPDCDVLPTPQNIRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFE------CSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSFPNNIGCPSCCPFECSPDNPMFTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPSSAPTR | |||||||||||||
5 | 6e5oY | 0.10 | 0.10 | 3.64 | 1.13 | SPARKS-K | GGGKAKVIDLTFDPDDEQPLAFGTRQGREFIWNDLLSLETGLIKLANGRVIEKTIYNFRREVVDPSNIKPRGENIPAVIALTDPEGCPLRKEKQRAIQRRAGGYSRASKSRNLADDMVRNSARDLFTHDAVLVFANLSRGQYTKMEDWLTAKLAYEG-LTSKTYLQYTSKTCSNCGFTITYADDVMLVRLKKTSDGWATTLNKAEYQITYYNKRQTVSKWTKGRRDEALFLLKKRFSHRPVQEQFVCLDCHEVHA | |||||||||||||
6 | 2xd8A | 0.11 | 0.11 | 3.94 | 0.70 | FFAS-3D | LGRSNLSTGTGYGGADKYALYLKLFSGEMFKGFQHETIARDLVTKRT---LKNGSSFHTPGTPILGNADKAPPVAEKTIVMDDLLISSAF---VYDLDETLAHYELRGESKKIGYALAEKYDRLIRVGSGTNESDAFTASALVNAFYDAAAVLNPRQYIQDIGSNGLVNRDVQGSALQSGNGVIEISMNIPFLGKYGVKYGGTTGETSPIGPTPENANATGGVNNDLGAKSCGLIFQKEAAGVVEPQVQNPAAAV | |||||||||||||
7 | 6btmE | 0.14 | 0.05 | 1.73 | 0.27 | HHpred | -------------------------------NSAPNYQYFPNMYESVAYEPYTEAKIFKGGKLPVEGTINRGFEPYEYENSTAGYEL-----AKANL-KSPL---TEEEKGKGKELFE---IYCIS-CHGAAGNG------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
8 | 4nl6A | 0.14 | 0.12 | 4.16 | 0.93 | MUSTER | MSSGGSGGG-VPEQEDSVLFRRGTGQSKAVASFKHA--------------LKNGD------ICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKSAIWSEDGCIYPATIASIDFKEQNLSDLLSPICEVANNIEQN--------AQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIP--PPPPICPDSLDDAD | |||||||||||||
9 | 2vwkA | 0.08 | 0.03 | 1.08 | 0.44 | CNFpred | --------------------------------------------------------------------KFCKDFPGFIPSLLGDLEERQKVKKKMKATIDPIEKKLLDYRQRAIKILANSFYGYYGYAKARWYCKECAESVGRQYIETTIREIE----------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 2pffB | 0.11 | 0.11 | 3.93 | 0.96 | HHsearch-2 | MAKRPFDKKSNSAQGNTDDYFEELTLSELIRTTLDAEKVFTGLNILEWLENPSPDKDYLLSIPISCPLIVITKLLGFTPGELRSYLKGATGHSQVAIAETDSWESFFVSVRKAI----TVLFFIGV-RCYE-AYPN--TSLPPSILEDSLENNESPMLSISNLQEQVQDYVNKTNSHLPAGKQVEISLVNSRIPFSERKLFLPVASPFHSHLLVPASDL--INKDLVKNNVSFNAPVYDTFDGSDLLPVKWETTT | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |