>PF13929 (297 residues) LLQNLQSQDYPSAFRLINNNKDQSLQLMQTLVEWVSNLPIEEEAAVPWSKWVTAFESCWP LVLPEEKASQYWSLRLKFFKLVNMADMKHYNLSNFFNDYLLAKKATGAGLVPQDLVEFLK LAIVNTRYCDKHRGYWDLVHSNDIVVKALRLFEDVRGADAIVKDSSVVTMLLRTMVSGQE IGERATRLHAVYEVSDYLVDTFGPELTPPTIAGILEVLAAAKDWNKYLQFWEAGIGGLVP GADQRPWAHFIRLVVESGDVEMMRKLLSEGHLLWLDRLQVEIDDELKAQLGLLFAKA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | LLQNLQSQDYPSAFRLINNNKDQSLQLMQTLVEWVSNLPIEEEAAVPWSKWVTAFESCWPLVLPEEKASQYWSLRLKFFKLVNMADMKHYNLSNFFNDYLLAKKATGAGLVPQDLVEFLKLAIVNTRYCDKHRGYWDLVHSNDIVVKALRLFEDVRGADAIVKDSSVVTMLLRTMVSGQEIGERATRLHAVYEVSDYLVDTFGPELTPPTIAGILEVLAAAKDWNKYLQFWEAGIGGLVPGADQRPWAHFIRLVVESGDVEMMRKLLSEGHLLWLDRLQVEIDDELKAQLGLLFAKA | |||||||||||||||||||
1 | 4wslA | 0.13 | 0.11 | 3.84 | 0.97 | SPARKS-K | ISGLGKAGRLEEALELFEEMKEKSVVTYNTLISGLGKAGR-------LEEALELFEEMKEKGIVPSV---------VTYNTLISGLGKAGRL-EEALELFEEMKEKGIVPSVVTYNTLISGLGKAGRL-----------------EEALELFEEMKEKGIVP-SVVTYNTLISGLGKAGRL-------EEALELFEEMKEKG-IVPSVVTYNTLISGLGKAGRLEEALELFEEMKEKGI-VPSVVTYNTLISGLGKAGRLEEALELFEEMKE-----KGIVPSVVTYNTLISGLGKA | |||||||||||||
2 | 5k04A1 | 0.07 | 0.06 | 2.53 | 1.30 | FFAS-3D | IIDFIDQGNQSLITKKLAKSPLFYHVLQNEIHLKSGQR----------ELAIKKNLELLNRYPNDPLTIEKEKESSLVYENAIKKYPVS--TETLCLSWFDNSIEKY---DFKVFNRIFMYLNKNGK------------SRLHTLWYAFSFHLLLQEGET--DKASLYNSLGKKLMEGLQPFENTQEIYVYSKEIEQVLSGVTLPLDLELKLLYMKAMKENASFEALHAYTEKLLFKEKF-DDFDTWKLWILSGKEIGKSF--EELDQKLTLISLLKIELDYSRNIETSVENYYQK- | |||||||||||||
3 | 5iwwD | 0.12 | 0.10 | 3.42 | 1.16 | HHpred | LKACARLGALELGKQIHGSGFEGNVVVYNALIDMYSKC--G-----LLEEARKVFDEMPE---K---DVVTYNTLIDGLC----KA---GKLDE-ALKLFEEMVEKGIKPDEFTFSSVLKACARLGALEESNVVYNALISKCGLLEEARKVFDEMPE-----KDVVTYNTLIDGLCKAG-------KLDEALKLFEEMVE-KGIKPDEFTFSSVLKACARLGALELGKQIHGYVIK-SGFESNVVVYNALIDMYSKCGLLEEARKVFDE---------------------------- | |||||||||||||
4 | 5c9sB | 0.13 | 0.11 | 3.76 | 0.79 | MUSTER | WTASILDQAVADFERLLIGNPNS-SVVWMNYMAFQLQLS-------EIEKARELAERAL--TINFREEAEKLNIWIAMLNLENTFG------------------------TEETLEEVFSRACQYMDSYTIHTKLLGIYEISEKFDKAAELFKAT--KKFGGEKVSIWVSWGDFLISHN-------EEQEARTILGNALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADA--PKRIDLWNVYVDQEVKAKDKKKVEDLFERIKFFFNKWLQFEESEGDEKTIEYVKAKA | |||||||||||||
5 | 5ormA | 0.14 | 0.12 | 4.02 | 1.19 | CNFpred | ISGLGKAGRLEEALELFEEMIVPNVVTYTTLISGLGKA-------GRLEEALELFEEMKEKGIVP--DVVTYTTLISGLGKA--------GRLEEALELFEEMKEKGIVPDVVTYTTLISGLGKA-----------------GRLEEALELFEEMKEK-GIVPDVVTYNTLISGLGKA-------GRLEEALELFEEMKEK-GIVPDVVTYNTLISGLGKAGRLEEALELFEEMKEK-GIVPDVVTYTTLISGLGKAGRLEEALELFEEMKE-----KGIVPNVVTYTTLISGLGKA | |||||||||||||
6 | 5dizA | 0.13 | 0.09 | 3.04 | 1.03 | HHsearch-2 | ------------------------------------------------------------------NPETNLLFNLNSCSKS-------KDLSA-ALALYDAAITSSVRLSQQHFQTLLYLCSASITD---I-----SLQYL-AIDRGFEIFDRMVSSG-ISPNEASVTSVARLAAAKG-------NGDYAFKVVKEFVSVGGSIPRLRTYAPALLCFCEKLEAEKGYEVEEHMEAAGI-ALEEAEISALLKVSAATGRENKVYRYLHK-----LREYVGCVSEETLKIIEEWFCGE | |||||||||||||
7 | 4a1sA | 0.05 | 0.05 | 2.45 | 1.01 | Neff-PPAS | -ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI | |||||||||||||
8 | 5dizA | 0.13 | 0.09 | 3.03 | 1.82 | HHsearch | ------------------------------------------------------------------NPETNLLFNLNSCSK-------SKDLSA-ALALYDAAITSSVRLSQQHFQTLLYLCSASITD---I-----SLQYL-AIDRGFEIFDRMVSSG-ISPNEASVTSVARLAAAKG-------NGDYAFKVVKEFVSVGGSIPRLRTYAPALLCFCEKLEAEKGYEVEEHMEAAGI-ALEEAEISALLKVSAATGRENKVYRYLHK-----LREYVGCVSEETLKIIEEWFCG- | |||||||||||||
9 | 5h7cA | 0.10 | 0.10 | 3.73 | 0.98 | PROSPECTOR2 | LAEAKSLNVNQAVKQLAETDKEEVIEIVKELAELAKQSTDSEKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEATDKQSTDSELVNEIVKQLEEVAKEATDKELVEHIEKILEELEQQSDPSQSANLLAEAKSLNVNQAVKQLAEKAKEATDKEEVIEIVKELAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAQSTDSELVNEIVKQLEEVAKEATDKELVEHIEKILEELKKQS | |||||||||||||
10 | 4g23A | 0.13 | 0.07 | 2.58 | 1.15 | SAM | ------------------------------------------------------------------------------------------DVLE-ALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAA----TE------PNPGLSRGFDIFKQIV-D-KVVPNEATFTNGARLAVAKD-------DPE-AFDV-KQ--KAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHV-ESEV-VPEEPELAALLKVS-DTKNADKVYKTLQ-----RLRDLVRQVSKSTFD-IEEWFK-- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |