>PF13904 (262 residues) QADTQSQMTNRTYNLKSSTVRRDDCSSASTCSWTDMYGGALKPSESRSNIVPSLSLNMST TSSSGSSTYFRNLDEEKERHGQEAYQEWVKRKERQKQQKQLAAKQEREKRDAETAMRQRL AKERYQEWVRQKELQQKKTATGSIKSTASYSSYSSSSSFGSTMAPTSSSAKPTRKETPEA TKKRLEEWERIKTQQQQRERERQRQKQQSKEQLEKQRKQKSEGAWQNWMKSVGNRPKPVP LNQGFDTLRGTISNIYVNPVQW |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | QADTQSQMTNRTYNLKSSTVRRDDCSSASTCSWTDMYGGALKPSESRSNIVPSLSLNMSTTSSSGSSTYFRNLDEEKERHGQEAYQEWVKRKERQKQQKQLAAKQEREKRDAETAMRQRLAKERYQEWVRQKELQQKKTATGSIKSTASYSSYSSSSSFGSTMAPTSSSAKPTRKETPEATKKRLEEWERIKTQQQQRERERQRQKQQSKEQLEKQRKQKSEGAWQNWMKSVGNRPKPVPLNQGFDTLRGTISNIYVNPVQW | |||||||||||||||||||
1 | 4tqlA | 0.10 | 0.08 | 3.14 | 1.48 | SPARKS-K | -------YKQMVQELEKARDRMEKLYKEMVELIQKAIELMRKIFQEVKQEVEKAIEEMKKLYDEAKKKIEQMIQQIKQGGDKQKMEELLKRAKEEMKKVKDKMEKLLEKLKQIMQEAKQKMEKLLKQLKEEMKKMKEKMEKLLKEMKQRMEEVKKK---------MDDELLEKIKKNIDDLKKIAEDLIKKAEENIKEAKKIAEQLVKRAKQLIEKAKQVAEELIKKILQLIEKAKEIAEKVLKG----------------- | |||||||||||||
2 | 5hmoA | 0.13 | 0.06 | 2.12 | 1.06 | FFAS-3D | ----------------------------------------------------------------------------RGQIARRVYRQLLAEKRAEEEKRKREEEEKRKREEEERERERERREAELRAQQEEAARKQRELEALQQESQRAAELSRE--------------------LEKQKENKQVEEILRLEKEIEDLQRMKERQEEASLQKLQQLRDE------------------------------------------- | |||||||||||||
3 | 4ux3A | 0.14 | 0.13 | 4.58 | 1.23 | MUSTER | SGGSVMSASRRTVGLKKDDYQLND----RNVTKGDIVRMLETAGFSMNNPYNIVPQGKIVALTNAKDKERLQLDVVGAKSFEVKLKASLKKMEETEQKKIQINKEMGELNSKLSEMEQERKELEKYNELERNRKIYQFTLYDRELNEVINQMETSDQLLQRNDMNTEISGLKNVNKRAFENFKKFNERRKDLAERASELDESKDSIQDLIVKLKQQKVNAVDSTFQKVSENFEAVERLVPRGTAKLIIHS-IS-VSFNSKQN | |||||||||||||
4 | 5nnvA | 0.06 | 0.05 | 2.32 | 2.05 | Neff-PPAS | --------KEEELAESSAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQQLSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSESSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEKRLYKQKTTLL------------------------- | |||||||||||||
5 | 5nnvA | 0.09 | 0.08 | 2.92 | 1.13 | PROSPECTOR2 | AKEEELAESSA-----------ISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQLTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSESSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKQHGLDTYERELKEKRLYKQKTTLL--------------------------- | |||||||||||||
6 | 6irdB | 0.08 | 0.07 | 2.76 | 1.29 | SPARKS-K | LAAQQAELNSLKAAHAAEHSTMQKLHCTQVDKIVAQYDKEKSTHEKILEKAMKKCLEIKKETEIKIQTLTTDHKSKVKEIVAQHTKEWSEMINTHSAEEQEIRDLHLSQQCELLRKLLINAHEQQTQQLKLSHDRESKEMRAHQAKISMENSKAISQDKSIKNKAERERRVRELNSSTKKFLEERKRLAMKQSKEMDQLKKVQLEHLEFLEKQNEQAKEMQQMVKLEAEMDRRPATVV------------------------ | |||||||||||||
7 | 5lqxV | 0.13 | 0.07 | 2.37 | 1.05 | FFAS-3D | ---------------------------------------------------------------------------LISKTVAPLYGEMAKNRTDHVVGLLNQARADHVNAVKTDQVSNLKDVVSTTKALFEMSKETAALEAEAFELKQKVA-------------------------VASEAKSVLDSWVRYEAQVRQHEQEQLASTVISKVQSEKFQDKVLAQAVEE-VERLFAK--------------------------- | |||||||||||||
8 | 5nnvA | 0.09 | 0.08 | 3.04 | 1.21 | MUSTER | --------------AKEEELAESSAISAKEAKIEDTRD-KIQALDESVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQQLSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSESSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKE--RLYKQKTTLL---------------- | |||||||||||||
9 | 6irdB | 0.08 | 0.07 | 2.81 | 1.74 | Neff-PPAS | ------------------AAEHSTMQKLHCTQVDKIVAQYDKEKSTHEKILEKAMKKCLEIKKETEIKIQTLTTDHKSKVKEIVAQHTKEWSEMINTHSAEEQEIRDLHLSQQCELLRKLLINAHEQQTQQLKLSHDRESKEMRAHQAKISMENSKAISQDKSIKNKAERERRVRELNSSNTKKFLEERKRLAMKQSKEMDQLKKVQLEHLEFLEKQNEQAKEMQQMVKLEAEMDRRPATVV-------------------- | |||||||||||||
10 | 1jcha | 0.08 | 0.08 | 3.14 | 1.09 | PROSPECTOR2 | VAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMTPAVQTLSPGVTNNTDKDVRPAFGTQGGNTVLSPDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIK------QFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDDAALSSAMESRKKKEDKKRSAENNLNDEKNKPRKYHPAPKTENIKGLGDLKPGIPKTW | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |