>PF13853 (279 residues) FCVVYLIALVGNLIILFVIWTDRSLHQPMFYFLAMLSMIDLSLSTATIPKMLGIFWFSLQ ELCFGCCVAQVFFIHFFTVMESIVLLAMGFDRYVAICNPLRYTMILTNRIIAVIAVIVVI RSLCMIVPIIFLLLRLPYCGHRIIPHTYCEHMGVARLACASIRANVYYGLGNISILFLDV LLIIVSYSRILYAVFHLPSKDARLKALNTCSSHICVIFAFFGPALFSFLTHRFGHNIPQY IHILLANLYVVIPPALNPVIYGIRTKQIQQRVKHLLAKK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | FCVVYLIALVGNLIILFVIWTDRSLHQPMFYFLAMLSMIDLSLSTATIPKMLGIFWFSLQELCFGCCVAQVFFIHFFTVMESIVLLAMGFDRYVAICNPLRYTMILTNRIIAVIAVIVVIRSLCMIVPIIFLLLRLPYCGHRIIPHTYCEHMGVARLACASIRANVYYGLGNISILFLDVLLIIVSYSRILYAVFHLPSKDARLKALNTCSSHICVIFAFFGPALFSFLTHRFGHNIPQYIHILLANLYVVIPPALNPVIYGIRTKQIQQRVKHLLAKK | |||||||||||||||||||
1 | 3d4sA1 | 0.19 | 0.18 | 5.90 | 2.68 | SPARKS-K | MSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM----HWYRATHQEAINCYAEETCCDFFTN---QAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLLK--EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCRS-PDFRIAFQELLCL- | |||||||||||||
2 | 3emlA1 | 0.18 | 0.18 | 5.70 | 2.74 | FFAS-3D | ELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQSQGCGEGQVACLFEDVVPMN--------YMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAP--LWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSH | |||||||||||||
3 | 5zbhA | 0.15 | 0.15 | 4.94 | 4.32 | HHpred | YGAVIILGVSGNLALIIIILKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVYTLMDHWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLIINPRGWRP--NNRHAYVGIAVIWVLAVASSLPFLIYQVMTDEPLDAYKDKYVCFDQFP-----SDSHRLSYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNISSETKRINIMLLSIVVAFAVCWLPLTIFNTVFDWNHQCNHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDLQFFFNFC | |||||||||||||
4 | 3d4sA1 | 0.19 | 0.18 | 5.89 | 2.34 | MUSTER | MSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH----WYRATHQEAINCYAEE----TCCDFFTQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR--QLLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCL- | |||||||||||||
5 | 4ww3A | 0.18 | 0.17 | 5.61 | 1.80 | CNFpred | IGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEG----VLCNCSFDYISR----DSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSN-AGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWV | |||||||||||||
6 | 5zbhA | 0.15 | 0.15 | 4.94 | 0.82 | HHsearch-2 | YGAVIILGVSGNLALIIIILKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVYTLMDHWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLIINPRGWR--PNNRHAYVGIAVIWVLAVASSLPFLIYQVMTDEPFQAYKDKYVCFDQFPS-----DSHRLSYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNISSETKRINIMLLSIVVAFAVCWLPLTIFNTVFDWNHQCNHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDLQFFFNFC | |||||||||||||
7 | 5zbhA1 | 0.15 | 0.15 | 5.05 | 2.39 | Neff-PPAS | YGAVIILGVSGNLALIIIILKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVYTLMDHWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLIINPRGWR--PNNRHAYVGIAVIWVLAVASSLPFLIYQVMTDEPFQNVTLDAYKDKYVCFDQFPSDSHRLSYTTLLLVLQYFGPLCFIFICYFKIYIRLKY--RSSETKRINIMLLSIVVAFAVCWLPLTIFNTVFDWNHQIIHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDLQFFFNFC | |||||||||||||
8 | 5zbhA | 0.15 | 0.15 | 4.94 | 1.33 | HHsearch | YGAVIILGVSGNLALIIIILKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVYTLMDHWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLIINPRGWR--PNNRHAYVGIAVIWVLAVASSLPFLIYQVMTDEPFQAYKDKYVCFDQFPS-----DSHRLSYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNISSETKRINIMLLSIVVAFAVCWLPLTIFNTVFDWNHQCNHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDLQFFFNF- | |||||||||||||
9 | 5zbhA1 | 0.15 | 0.15 | 5.05 | 2.40 | PROSPECTOR2 | YGAVIILGVSGNLALIIIILKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVYTLMDHWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLIINPRGWR--PNNRHAYVGIAVIWVLAVASSLPFLIYQVMTDEPFQNVTLDAYKDKYVCFDQFPSDSHRLSYTTLLLVLQYFGPLCFIFICYFKIYIRL--KYRSSETKRINIMLLSIVVAFAVCWLPLTIFNTVFDWNHQIIHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDLQFFFNFD | |||||||||||||
10 | 3emlA | 0.19 | 0.18 | 5.90 | 3.49 | SAM | ELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST--GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQSQGCGEGQVACLF--------EDVVPMNYMVYFNFACVLVPLLLMLGVYLRIFLAARRQLNIFKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSH | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |