>PF13546 (274 residues) AAALSHADRKQPAHWYLKGLLLPGGRKSVEPMAARVHPQNVRSAHQSMHHLVADADWSDQ ALLAAVAAQVLPPLSRKSAACHWIVDDTGFSKKGVHSVGVARQYCGRLGKTDNCQVAVSL SIANEHGSLPVGYRLYLPEQWAQDTVRRKKAGVPDQVVFQTKTALAMDQIDSALATGMAA GVVLADAAYGTETHWRDQLSERGLLYMVGVRSNTKVWWGSHQPAPMPPASPKGGRPRTRP MRDSAHAPISVHEVAQRLPARTYRQVSWRQGSDA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | AAALSHADRKQPAHWYLKGLLLPGGRKSVEPMAARVHPQNVRSAHQSMHHLVADADWSDQALLAAVAAQVLPPLSRKSAACHWIVDDTGFSKKGVHSVGVARQYCGRLGKTDNCQVAVSLSIANEHGSLPVGYRLYLPEQWAQDTVRRKKAGVPDQVVFQTKTALAMDQIDSALATGMAAGVVLADAAYGTETHWRDQLSERGLLYMVGVRSNTKVWWGSHQPAPMPPASPKGGRPRTRPMRDSAHAPISVHEVAQRLPARTYRQVSWRQGSDA | |||||||||||||||||||
1 | 3ecpA | 0.13 | 0.11 | 3.94 | 1.41 | SPARKS-K | SSALGDPRRTARLVNVAAQLAKYSGK-SITISS-----EGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQ-EFPELLAIEDTTSLSYRHQVAEELGKLGSIQDKSR-GWWVHSVLLLEATTFVGLLHQEWWMRPD--------DPADADEKE--SGKWLAAAATSRLRMGSMMSNVIAVCDREAD-IHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGPQKGVVDKRGKR------------KNRPARKASLSLRSGR | |||||||||||||
2 | 3ecpA | 0.16 | 0.13 | 4.27 | 1.27 | FFAS-3D | SAALGDPRRTARLVNVAAQLAKYSG-KSITISS-----EGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLA--QEFPELLAIEDTTS-LSYRHQVAEELGKLGSIQDKSRGWWVHSVLLLEATTFRTVG--LLHQEWWMRPDDPAD-----ADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREA-DIHAYLQDKLAHNERFVVRSKHPRKD----------------------------VESGLYLYDHLKNQPELGGYQISIPQ---- | |||||||||||||
3 | 3ecpA | 0.12 | 0.11 | 3.84 | 1.59 | HHpred | SAALGDPRRTARLVNVAAQLAKYSG-KSITISSEG--S---KAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQE--FPELLAIEDTTLSYRHQVAEELGKLGSIQ-D-KSRGWWVHSVLLLEAFRTVGLHQEWWMRPDDPA--------DAD--EKESGKWLAAAATSRLRMGSMMSNVIAVCDREADI-HAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGVDKRGKRK-NRPARKA-----S-LSLRSGRITLKQG--- | |||||||||||||
4 | 3ecpA | 0.12 | 0.11 | 3.87 | 0.79 | MUSTER | SAALGDPRRTARLVNVAAQLAKYSGK-SITISS-----EGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPE--LLAIEDTTLSYRHQVAEELGKLGSIQDKSRG--WVHSVLLLEAFRTVGLLHQEWWMRPD--------DPADADEKESG--KWLAAAATSRLRMGSMMSNVIAVCDREAD-IHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGPQKGVVDKRGKRKNRPARKASLSL---RSGRITLKQGNIT | |||||||||||||
5 | 1muhA | 0.12 | 0.10 | 3.58 | 1.59 | CNFpred | SAALGDPRRTARLVNVAAQLAKYS-GKSITISSEGS-----KAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQ-EFPELLAIEDTTSLSYRHQVAEELGKLGSI--QDKSRGWWVHSVLLLEARTVGLLHQEWWMRPDDP----------ADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREAD-IHAYLQDKLAHNERFVVRSKHPRKDVE----------------------------SGLYLYDHLKNQPELGGYQISIPQKGVV | |||||||||||||
6 | 3ecpA | 0.12 | 0.11 | 3.96 | 2.69 | HHsearch-2 | SAALGDPRRTARLVNVAAQLAKYSG-KSITISSEG--S---KAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQE--FPELLAIEDTTLSYRHQVAEELGKLGSIQ-D-KSRGWWVHSVLLLEAFRTVGLHQEWWMRPDDPA--------DAD--EKESGKWLAAAATSRLRMGSMMSNVIAVCDREADI-HAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDKQPEIPQKGVVDKRNRPARKSGRITLK--Q---GNITLNAVLAEEIPKG | |||||||||||||
7 | 3ecpA | 0.12 | 0.11 | 3.99 | 1.16 | Neff-PPAS | SAALGDPRRTARLVNVAAQLAKYSGK-SITISS-----EGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQE-FPELLAIEDTTSLSYRHQVAEELGKLGSIQ-DKSRGWWVHSVLLLEATTTVGLLHQEWWMRPDDPADA----------DEKESGKWLAAAATSRLRMGSMMSNVIAVCDREAD-IHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDSLRSGRITLKQGNITLNAVLAEEPPKG | |||||||||||||
8 | 3ecpA | 0.12 | 0.11 | 3.85 | 3.41 | HHsearch | SAALGDPRRTARLVNVAAQLAKYSG-KSITISSEG--SK---AAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQE--FPELLAIEDTTLSYRHQVAEELGKLGSIQ-D-KSRGWWVHSVLLLEAFRTVGLHQEWWMRPDDPA--------DAD--EKESGKWLAAAATSRLRMGSMMSNVIAVCDREADI-HAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGVDKRGKRK-NRPARKA-----S-LSLRSGRITLKQGNI- | |||||||||||||
9 | 1muha | 0.12 | 0.11 | 3.97 | 1.22 | PROSPECTOR2 | ALHLGDPRRTARLVNVAAQLAKYSGKS----ITISSEGSK--AAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQE-FPELLAIEDTTSLSYRHQVAEELGKLGSIQ-DKSRGWWVHSVLLLEATTFRTLLHQEWWMDPADADEKESG-------------KWLAAAATSRLRMGSMMSNVIAVCDREAD-IHAYLQDKLAHNERFVVRSKHPRKDVESGPQKGVVDKRGKRKNRPARKINPPKGETPLKALRVIDILTPDECQDLMAQGIKIG | |||||||||||||
10 | 3ecpA | 0.13 | 0.09 | 3.27 | 1.39 | SAM | --ALGDPRRTARLVNVAAQLAKYSG-KSITISSEG-SK----AAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEF--PELLAIEDTTSLYRHQVAEELGKLGSIQ-DKSRGWWVHSVLLLEA-TTFRTVGQEWWMRPDDPA----------DADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADI-HAYLQDKLAHNERFVVRSKHPRKDV--------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |