>PF13440 (292 residues) ILARLLSPSDYGIIAMVTIFFAVAQSFVDSGFSNALVRKTDRVEEDLSTCFYFNIGVGII AYIVLFLIAPLVANFYNQPILSPIIRITGLGVILNSLCVVQQALFTIKIDFKSQAKITLS ATVISGIVGILLAYQGYGIWALVWQGVASSIVRMGLLWLMSKWRPRTGFSKSSFNYLFGY GSKLLASGLLDTIYNNIYPIVIGKFYNPAQLGNYSRALGWAQLPSANITSILQRVTFPVL SAIQDDSLRLQNSYRRLLKLSAFIVFPLMMGLASMASPLIRVILTAKWDGCV |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | ILARLLSPSDYGIIAMVTIFFAVAQSFVDSGFSNALVRKTDRVEEDLSTCFYFNIGVGIIAYIVLFLIAPLVANFYNQPILSPIIRITGLGVILNSLCVVQQALFTIKIDFKSQAKITLSATVISGIVGILLAYQGYGIWALVWQGVASSIVRMGLLWLMSKWRPRTGFSKSSFNYLFGYGSKLLASGLLDTIYNNIYPIVIGKFYNPAQLGNYSRALGWAQLPSANITSILQRVTFPVLSAIQDDSLRLQNSYRRLLKLSAFIVFPLMMGLASMASPLIRVILTAKWDGCV | |||||||||||||||||||
1 | 6cc4A | 0.15 | 0.15 | 5.07 | 2.07 | SPARKS-K | IVARIFGAMATDAFFVAFKLPNLLRRIFSQAFVPILAEYKSATRVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTAFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIPAFAPTLLNISMIGFALFAAPYNPPVLALAWAVTVGGVLQLVYQLPHLKKLPRINFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFASFL-ASGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSFANHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQAFDALMT | |||||||||||||
2 | 5t77A | 0.14 | 0.14 | 4.65 | 2.55 | FFAS-3D | LFAKYFGVSYELAYFIAIMFPFFLRKVFGEGAMSSAFKSGEEKDKFLSSVINGFSLIILALVILSYFFPELIINLFGAGSAKKLLLITSPSIYFIFLWAISYSILNTNNKFFWPALTPSISNITIIIGTFLSTKY--GIISPTIGFLIGSILMFFSIIKSI-IKHKYYFTIKHFPHFLKLFFPTFMTMVVSQINTVVDMNVVSFYDKGSISYLQY-ASRFYLLPYGLFAVSVSTVVLSKISN---DRKNFNYHLNDALKTTLFFTIPSMVGLIFLSTPIIRFFYE------- | |||||||||||||
3 | 6cc4A | 0.16 | 0.16 | 5.34 | 2.03 | HHpred | IVARIFGAMATDAFFVAFKLPNLLRRFAEGAFSQAFVPSKQGEDVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTDTADTSQLLKITFPYILLISLASLVGAILNTWNRFSIPAFAPTLLNISMIGFALFAAPFNPPVLALAWAVTVGGVLQLVYQLPHILVLPRINFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFAS-FLASGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSSGNHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQYKFTAF- | |||||||||||||
4 | 6cc4A | 0.17 | 0.16 | 5.43 | 1.64 | MUSTER | IVARIFGAMATDAFFVAFKLPNLLRRIFAEGFSQAFVPI-DATRVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTAPALTSQLLKITFPYILLISLASLVGAILNTWNRFSIPAFAPTLLNISMIGFALFAAPFNPPVLALAWAVTVGGVLQLVYQLPHLKVLPRINFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFASFL-ASGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSFANHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQGKFTAFD | |||||||||||||
5 | 5y50A | 0.11 | 0.11 | 3.86 | 1.65 | CNFpred | MMVGHLGELFLSSTAIAVSFCSVTGFSVVFGLASALETLCG-QYEKLGVHTYTGIVSLFLVCIPLSLLWTYIGDILSAQEAGKFATWLIPALFGYATLQPLVRFFQAQSLILPLVMSSVSSLCIHIVLCWSLVFKFLGSLGAAIAIGVSYWLNVTVLGLYMTRATISMSLFEGMGEFFRFGIPSASMICLEWWSFEFLVLLSGILPPKLEASVLSVCLSTQSSL-YQIPESLGAAASTRVANELGNPKQARMAVYTAMVITGVESIMVGAIVFGARNVFGYLFSSETEVVDY | |||||||||||||
6 | 6cc4A | 0.16 | 0.16 | 5.43 | 1.62 | HHsearch-2 | IVARIFGAGMTDAFFVAFKLPNLLRIFAEGAFSQAFVPILKQGEVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTATADTSQLLKITFPYILLISLASLVGAILNTWNRFSIPAFAPTLLNISMIGFALFAAPFNPPVLALAWAVTVGGVLQLVYQLPHLKKLPRINFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFASF-LASGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSSGNHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQYKFTAFQ | |||||||||||||
7 | 4lz6A | 0.09 | 0.09 | 3.49 | 1.60 | Neff-PPAS | FISYAVGIEGVAGVTIAFPIMMIMMSMAGAGGASVISRRGEEANQVFGNILTVILVLSVIGFISAFTLLGPALQLFGAGYATDYLFPILLGSIFFFFAFAANNIIRSEGNATFAMVTMIVPAVLNILLDVLFIFGNMGVLGASIATVIAQASVTGLVLRYFLTGKDLRMKGSVIKEVCLVGLPAFVQQSSASLMMIAINSMLLRFGSDFYVGVFGLVQRIMMFVMMP-MMGIMQAMQPIVGYNAKQYSRLRETVMLGFKVATIFSIGIFALLMLFPEALLRVFTADREVIQA | |||||||||||||
8 | 3vvnA | 0.11 | 0.11 | 3.95 | 2.55 | HHsearch | WVSG-LGPESLAAVGLFFPVFMGIIALAA-GLGVGTSSRIGRDKNVAVHSLILSLILGVTITITMLPAIDSLFRSMGAELAIEYARVLLAGAFIIVFNNVGNGILRGEGDANRAMLAMVLGSGLNIVLDPIFIYLGFGVVGAAYATLLSMVVTSLFIAYWLVRDTDFSPSREILKDILRVGLPSSLSQLSMSIAMFFLNSVAITAGGENGVAVFTSAWRITMLG-IVPILGMAAATTSVTGAAERNVEKLETAYLYAIKIAFMIELAVVAFIMLFAPQVAYLFTAQVIGDL- | |||||||||||||
9 | 3vvnA | 0.11 | 0.11 | 4.04 | 1.87 | PROSPECTOR2 | WVSG-LGPESLAAVGLFFPVFMGIIALAA-GLGVGTSRDKEGADNVAVHSLILSLILGVTITITMLPAIDSLFRSMGAELAIEYARVLLAGAFIIVFNNVGNGILRGEGDANRAMLAMVLGSGLNIVLDPIFIYLGFGVVGAAYATLLSMVVTSLFIAYWLFVKRDFSPSREILKDILRVGLPSSLSQLSMSIAMFFLNSVAITAGGENGVAVFTSAWRITMLG-IVPILGMAAATTSVTGAAERNVEKLETAYLYAIKIAFMIELAVVAFIMLFAPQVAYLFTAQVIKGDL | |||||||||||||
10 | 4lz6A | 0.09 | 0.09 | 3.39 | 2.40 | SAM | -ISYAVGIEGVAGVTIAFPIMMIMMSMA-GALGIGGASRGEEANQVFGNILTVILVLSVIGFISAFTLLGPALQLFGATSVTDYLFPILLGSIFFFFAFAANNIIRSEGNATFAMVTMIVPAVLNILLDVLFIFLNMGVLGASIATVIAQASVTGLVLRYFLTGSDLRMKGSVIKEVCLVGLPAFVQQSSASLMMIAINSMLLRF-GSFYVGVFGLVQRIMMFV-MMPMMGIMQAMQPIVGYNAKQYSRLRETVMLGFKVATIFSIGIFALLMLFPEALLRVFTADRIQAGV | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |