>PF13257 (260 residues) HTRTLSLLSPDMGVVKPPFPMPSPSDSTKSSDSQATRHPRSATLPSVDRADTSKTVETSD KPTEENWRRSMPPPSSEALLRTGRQMASDLREGLWTFLEDIRQATVGEEGISATRSRTLQ PPTSGTARTRSGQRSERSVTPVRNRDQNGNSIGRTSSSSSLSKDASASRKTGNNNSSSTS PPNGTEVSFWSEFGVDTPGQKLKPKQTKRAAAVAASNTQNGQKESANSNQVEVGEEDDDW NNWDTPQQDKKSHTPSSSRS |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | HTRTLSLLSPDMGVVKPPFPMPSPSDSTKSSDSQATRHPRSATLPSVDRADTSKTVETSDKPTEENWRRSMPPPSSEALLRTGRQMASDLREGLWTFLEDIRQATVGEEGISATRSRTLQPPTSGTARTRSGQRSERSVTPVRNRDQNGNSIGRTSSSSSLSKDASASRKTGNNNSSSTSPPNGTEVSFWSEFGVDTPGQKLKPKQTKRAAAVAASNTQNGQKESANSNQVEVGEEDDDWNNWDTPQQDKKSHTPSSSRS | |||||||||||||||||||
1 | 5jcss | 0.07 | 0.07 | 2.70 | 1.52 | SPARKS-K | ALEPIIQAIGESLDIASSRISLFLTQHVPTLENLDDSIKEKLNIQKKSMNSTLFAFTNHSLRLMEQISVCIQMTEPVLLVTVVQQLAKMLAKKL--------------TVINVSQQTETPKTVAVPIQETLFNATFSLKKNEKFHKMLHRCFNKNQWKNVVKLWNEAYKMAQSILKITNTENENENKK--KKRRLNTHEKKLLLDKWADFNDSVKKFEAQSSSIENSFVFNFVEIRAGEWLLLDEVNLATADEPDSRSIL | |||||||||||||
2 | 6gejM | 0.10 | 0.10 | 3.67 | 1.25 | MUSTER | H---PNLFEVRPILTSFVLEHCVASDYKDVERTLLKLFKKNNQVNRVDLDFLNLVFTLNDKLTSYHAEEISKLTCVKNFVEEVNKLRETNKQLQEEFGE-----ASFLNFQDANQYFKYSNKQKLEGTVDMLNFLKMVNKLRCDRRPIFGKNLIDLLTKDRRVKYDKSSIIDNELIKPLQTRVLDNRKIIDTFAVLTPSAVSLDMRKLALGLNDDSSVGENTRLKVMQNCFEVSNPLHQLQTKLTIAFPDKSLLQYDCGK | |||||||||||||
3 | 2bsgA | 0.06 | 0.06 | 2.56 | 2.48 | Neff-PPAS | QINKKDISDLKTLTSEHTEILNGTNNTVDSILADIIRNDLLWIKRELMKHRIINNTDVITSQGIRLSLTIEVGNLREELVYSRLNEIDTKQTTVESDISAIKTSISIITSVNTNTDNIASINLEIKQRLTVIETSIIKGQIKDNTTSILRANVSWLNLNRVSTIETSVSGLNNAVQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAP | |||||||||||||
4 | 4bmlA | 0.09 | 0.09 | 3.36 | 1.31 | PROSPECTOR2 | VRYATGLVRSYDLRGGKSKQFMFTGKLSAGYHTPGTPIVGDAGIKANEKTLVMDDLLVSSFVYSLDEIFSQYSTRAEVSKQIGEALATHYD-------ERIARVLAKASAEASPVTGEPGGFHVNIGAGNTNDDERSAPQEGRVISSVDTNILNREIGNSQGDMNSGKGLYSNNLAGLYGQDLSSAAVTGENNDYQVDASALAGLIFHREAAGCIQSVAPTIQTTSGDFNVQYQGDLIVGKLAMGCGSLRTSVAGSFQAA | |||||||||||||
5 | 4k0mC | 0.11 | 0.08 | 2.80 | 1.49 | SPARKS-K | -----------------KVYTIDEAARTAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQ--VRVLAIAKGE----------------------KIKEAEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------- | |||||||||||||
6 | 4bmlA | 0.09 | 0.09 | 3.47 | 0.63 | FFAS-3D | --KGLVRSYDLRGGKSKQFMFTGKLSAGYHTPGTPIVGDAGIKANEKTLVMDDLLVSSQFVYSLDE-IFSQYSTRAEVSKQIGEALATHYDERI---ARVLAKASAEASPVTGEPGGFHVNIGAGNTNDAQAIVDGFFEAAAVLDERSAPQEGRVSPRQYYSLISSVDTNILNREIGNSQGDMNSGKGLYSIAGIRILKSNNLAGLYGQDLSSAAVTGENNDYQVDASALAGLIFHREAAQSVAPTIQTTSGDFNVQYQG | |||||||||||||
7 | 1t1mC2 | 0.13 | 0.02 | 0.80 | 0.30 | HHpred | ---------------------------------------------------------KM-KRTLIEDELRKMRPQREKWVKKAKEIVEEGKIAI----RNIRREILK--------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 6etxG | 0.11 | 0.11 | 3.90 | 1.23 | MUSTER | HP---ELFERQETWSPFHISLKPYHISKFIYRHGQIRVFNSPFAPDYIQRSLFHRKGINEESCFSFLRFIDISPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSWGAPEGYLRNKDFLLGVNFPLSVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAVPLDSYCNDRSAEYERRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLITDSGK | |||||||||||||
9 | 6bnsA | 0.17 | 0.05 | 1.52 | 0.31 | CNFpred | --QAISLFSPDRPGVLQHRVVDQLQEQFAI-------------------------------TLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQ----------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 1fh1A | 0.23 | 0.03 | 0.97 | 0.45 | HHsearch-2 | -------------------------------------------------------------------------LTLEIISAINKLV-----LGLADVLWDLEQLNIGDEAVRG--------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |