>PF13226 (279 residues) LCDMRSFLREGRYGELDKQLESALTASFLSRDAEQRYYRGWMDMENTPDLRSVISMGPEG LAQIKAWQHDCPESNHAWLAETLYWHHCAWRYRSYGWAKKTTAAMWVCAAACNEMMVLAA LQALTLEPRQWMAAALIIPAITAFGVPAWLAVIIANEKADSLPVLGELRDYQQCYPEEMA ALMSYSGLNAYAQILAPDALPPGLLRNQTEKALIGPHYWLFASLHIHPTQFYIFTDYIPF QMPRWRGLPQDMLDLIVSPACEHLSLQEKDHLRHLIWWD |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | LCDMRSFLREGRYGELDKQLESALTASFLSRDAEQRYYRGWMDMENTPDLRSVISMGPEGLAQIKAWQHDCPESNHAWLAETLYWHHCAWRYRSYGWAKKTTAAMWVCAAACNEMMVLAALQALTLEPRQWMAAALIIPAITAFGVPAWLAVIIANEKADSLPVLGELRDYQQCYPEEMAALMSYSGLNAYAQILAPDALPPGLLRNQTEKALIGPHYWLFASLHIHPTQFYIFTDYIPFQMPRWRGLPQDMLDLIVSPACEHLSLQEKDHLRHLIWWD | |||||||||||||||||||
1 | 3mkrA | 0.10 | 0.09 | 3.20 | 1.18 | FFAS-3D | LFDVKNAFYIGSYQQCINEAQRLYRAYLAQRKYGVVLDPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVTNTTFLLMAASIYFDAALRTLHQG---DSLECMAMTVQILLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI---------FQEMADKCSPTLLLLNGQAACH--------------------MAQGRWEAAEGV-LQEALDKDSGHPETLINLVVLS-QHLGKPPEVTNRYLSHPFIKEYRAKENDFDRLVLQYA | |||||||||||||
2 | 5udiA | 0.09 | 0.08 | 2.89 | 1.12 | CNFpred | VLLALKLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKG----------SVDKALELLKKALQETPTSVLLHHQIGLCYKAQMIQIKEAT--GQPRGQNREKLDKMIRSAIFHFESAVEKKPTFEVAHLDLARMYIEAGNHRKAEENFQKLL----CMKPVVEETMQDIHFHYGRFQEFQKKSDVNAIIHYLKAIKIEASLTRDKSINSLKKLVLRKLRRKALDLESLSLLGFVYKL--EGNMNEAEEYYER--------------------- | |||||||||||||
3 | 4hnwA1 | 0.07 | 0.06 | 2.69 | 1.00 | Neff-PPAS | FLEALKLYEGKQYKKSLKLLDAILKKDGSHVDSLALKGLDLYSVG----------EKDDAASYVANAIRKIESAPICCHVLGIYMRNTKEYKESIKWFTAADLATLQSQIGDFKNALVSRKKYWEAFLGYRANWTSLAVAQDVNGEINTLSQFEKLAEGKISYKNDIMYKAASDNQDKLQNVLKHLNDIEPCVFDKFGLLERKATIYMKLGQLKDASIVYRTLIKRNPDNFKYYKLLEVSLGIQ--GDNKLKKALYGKLEQFYPRCEPPKFIPLTFL-- | |||||||||||||
4 | 5dseA | 0.09 | 0.09 | 3.50 | 0.87 | SPARKS-K | LLAAKLCMGLHWLEEAEKFAKTVVTSEFKAKGYLALGLTYSLQATDASLRGMQEVLQRKALLAFQRAHSLSPTDHQAAFYLALQLAIEALGYVRQALQGDDANSLHLLALLLSAQALNIIDMALSEYPENFILLFSKVKLQSLCRGPDEALLTCKHMLQIWKSCYLHPWMTLAQIWLHAAEVYIGIG-KPAEATALFPMSHNVLQIAELRGSMDEARRWYEEALAISPTHVKSMQRLALILHGR----YSLAEKILRDAVQVNSTHEVWNGLGEVLQAQ | |||||||||||||
5 | 4hnwA1 | 0.10 | 0.09 | 3.34 | 1.12 | FFAS-3D | ---ALKLYEGKQYKKSLKLLDAILKK---DGSHVDSLALKGLDL-------YSVGEKDDAASYVANAIRKISASPICCHVLGIYMYKESIKWFTAALNGSTNKQIYRDLATLQKNALVSRKKYWEAFLGYRANWTSLAVAQDVNGERNTLSQFEKLAEGKISDMYKAASDNQDKLQNVLKHLNDIEPCVFDKFGLLERKATIYMKLGQLKDASI----VYRTLIKRNPDNFKYYKLLEVSLGIQ--GDNKLKKALYGKLEQPRCEPPKFIPLTFL---- | |||||||||||||
6 | 6gmhQ | 0.11 | 0.09 | 3.37 | 0.56 | HHpred | FGLGQMYIYRGDKENASQCFEKVLKAY-PNNYETMKILGSLYAASEDQ------EKRDIAKGHLKKVTEQYPDDVEAWIELAQILEGTATRILQEKVQADVPPEILNALHGNLGEAKKYFLASLDRAKANAISVTTSYNLARLYCEFHEAEKLYK-------NILREHPNYVDCYLRLG--AMARKGN------------------------FYEASDWFKEALQINQDHPDAWSLIGNLHLAK--QEWPGQKKFEKQPMLAHQEKEKRHQDRALAIYK | |||||||||||||
7 | 4hnwA1 | 0.08 | 0.08 | 3.07 | 0.79 | MUSTER | FLEALKLYEGKQYKKSLKLLDAILKKD----SHVDSLALKGLDLYSVGEK-------DDAASYVANAIRKIESSPICCHVLGIYMRNT--EYKEGSTNKQIYRDLATLQSQIFKNALVSRKKYWEAFLGYRANWTSLAVAQDVNGERQQAINTLSQKLAEGKISDSEKYEHSECLMYKNDIMYKAASDNQNDIEPCVFDKFGLLERKMKLGQLKDASIVYRTLIKRNPDNFKYYKLLEVSLGIQ--GDNKLKKALYGKLEQFYPRCEPPKFIPLTFL-- | |||||||||||||
8 | 3zgqA | 0.09 | 0.08 | 2.88 | 1.12 | CNFpred | VFLALKLQDVHAEAEGEKYIEEILDQISSQPYVLRYAAKFYRRKN----------SWNKALELLKKALEVTPTSSFLHHQMGLCYRAQMIQIKKAT--NRPKGKDKLKVDELISSAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKA---LENITDDHKHQ---IHYHYGRFQEFHRKSENTAI-----------------------HHYLEALKVKDRRTKLTSALKKLSTKR-ALDVQSLSALGFVYKLEGEKRQAAEYYEKAQKID | |||||||||||||
9 | 6gmhQ | 0.11 | 0.09 | 3.26 | 0.65 | HHsearch-2 | YQLARSFHVQEDYDQAFQYYYQATQFA--SSSFVLPFFGLG-QMYIY------RGDKENASQCFEKVLKAYPNNYETMKILGSLYAASATRILQEKVQADVPPEILGALHGNLGEAKKYFLASLDRAKAEAISVTTSYNLARLYCEFHEAEKLY-------KNILREHPNYVDCYLRLG--AMARKGN------------------------FYEASDWFKEALQINQDHPDAWSLIGNLHLAK--QEWPGQKKFERISMLQHQEKEKRHQDRALAIYK | |||||||||||||
10 | 5xw7A | 0.10 | 0.08 | 2.95 | 0.92 | Neff-PPAS | LSQVRLGEATKREDLVRQSLYRLELIDPDNPDVIAARFRYLLRQG----------DNAGAQKQLDRMKQLAPDSAAYKSSVTSMTLS------GAEGRQALQQARLQATTGHVPEALAAYDALFKGNPPEGDLAVEYWALVAKVPRSEAITQLKALNARNPG---------NAALQNSLAQLLFGEG------------------------RDAEAYAVLEQMAKSSAGREAAAGLWYQQIQ-RMPVSDASVKALQRFLTVFSSGDTVDSARTQLAAQQ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |