>PF13116 (280 residues) DDAGEAWRYFPRSLMGASLADYLTHSLIKGKIENATLLFQGNPHDFPFKQNNGQFQVWVP LRHATFQYQPDWPALFDFDIDLNFQNNGLWMQVPKAKLGKVDATQLTAVIPDYGKNKLLI DGKLSGSGKNIHDYFKHSPLAESIGSTLDELQLDGKVDGKLHLDIPLEDGKVNASGEVVL QDTTLFIKPLDSKMEHVSGKFRFDNGKLQSDTLSAQWLGHPLSLRFTTQDLPKHYQVDVD LNAQWAAGKLPEVPAEIRRQLSGTLDWQGKVNIAIPAQNT |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | DDAGEAWRYFPRSLMGASLADYLTHSLIKGKIENATLLFQGNPHDFPFKQNNGQFQVWVPLRHATFQYQPDWPALFDFDIDLNFQNNGLWMQVPKAKLGKVDATQLTAVIPDYGKNKLLIDGKLSGSGKNIHDYFKHSPLAESIGSTLDELQLDGKVDGKLHLDIPLEDGKVNASGEVVLQDTTLFIKPLDSKMEHVSGKFRFDNGKLQSDTLSAQWLGHPLSLRFTTQDLPKHYQVDVDLNAQWAAGKLPEVPAEIRRQLSGTLDWQGKVNIAIPAQNT | |||||||||||||||||||
1 | 1kmoA | 0.05 | 0.05 | 2.11 | 1.20 | CNFpred | -----VVNFVTRAIP-----------DFGIEAGVEGQLSPTSSQ-------NNPKETHNLMVGGTADN---GFGTALLYSGTRGSHSATRIDDLMLKSKYAPDEVHTFNSL-----LQYYDGEADMPGGLSRADYDADRWQSTR----PYDRFWGRRKLASLGYQFQPDSQHKFNIQGFYTQTLRSGYLE-KRITLSPRNYWVRGIEPRYSQI-FMIGPSAHEVGVGYR----YLNESTHEMRYYTATSGQLPSGSSPYDRDTRSGTEAHAWYLDDKIDI | |||||||||||||
2 | 4es8A | 0.05 | 0.05 | 2.29 | 1.11 | Neff-PPAS | ---------------PDDLMNFKGTWEVSADGSSGRFFSKGATDSYREHNEVKDSYIKIDKQSIAARYKTSTTAPYSVAFKVNTKSHDYKITFEQGQIASGITVDYRIGSAFNKTTDDSFKISDESKYASNVKIEGEEQGFKQREQGDKTISFRTLKEGPMSLVLLSKEKKPQGDLDVEFKNLKIIDVTNPSQLDKGVAYVGNKNVQLTLKSDDGRTNFEGDEISLFNSRG--ELLQTVTVTKDQQNPISITLSEDQAKSLKNKEKLKVSIKQKQSKKTS | |||||||||||||
3 | 6beaA | 0.06 | 0.05 | 2.25 | 0.84 | SPARKS-K | TLDQDVVINGDNKITAVTIETSDSDKDLNVTFGGHDITATSTVNQDFSGNKNVVINATITAQGTAMVIDSTGDVVNGGNFVAKNEKGSATGISLEATGNNLTLNGTTINAQGNKSYSTAIFAQKGNLLQ----------------------GFDGDATDNITLAVTAGNKTGIHTVNLNIKGSVIGAANNKQTSATQNLNLSVADSTIYSDVLALSESETTTNVNMNVAR----SYWEGNAYTFNSGD---KAGSDLDINLSDSSVWKGDASVSLQNGSV | |||||||||||||
4 | 2d42A | 0.09 | 0.07 | 2.59 | 0.80 | FFAS-3D | --------------LLRELEIYGMQYANSHQYTYGSSYS-------DDTNPIRIAGLDARIPDPIV--TDPVNHIVLDRRIITNTSNSLEGVFSSNAYTSRTSSQTRDGVTAGTNITGKYFANLFFE--------------------------QVGLSGRIAFEGAVTNENKYTLDATQDFRDSQTIR--VPPFHRATGVYTLEQGAFEKMVLECVVSGNGIRYYRTLPDNKEQNRAYFTGEGT----------------ISGQIGLQTFIDVVIPLPG- | |||||||||||||
5 | 5vtgA | 0.11 | 0.05 | 1.81 | 0.33 | HHpred | -------------------------------------------------PNLFTLDGRVDVPWARIVVHD-----------------------------PI---------------NSNLIVHVGNNV------------------RIDAFGLKARLTGDLNVVQDKQ--GLGLNGQINIPEGRFHAY--GQDLIVRKGELLFSGPPLNIE---AIRN---------PDATEDDVIAGVRVTGLADEPKAE-IFDPA----------------------- | |||||||||||||
6 | 5n8pA | 0.10 | 0.10 | 3.56 | 0.80 | MUSTER | SGVTGLTALNTNTSGA-------AQTVTAGAGQNLTATTAAQAANNVAVDGGANVTVASGVTSGTTTVGANSAASGTVSVSVANSSTT---TTGAIAVTGGTAVTVAQTAGNAVNTTLTQDVTVTGNSSTTAVTVTQTAAATAGAT--VAGRVNGAVTITDSAAASATTAGKIATVTLGFGAATIDSSALTVNLSGTGTSLGIGRGALTATPLTLNVNGLTTTGAITDSEAAADDGFTINIAGSTASSTIASLVAADATTLSGDARVTIT-SHTAAALTG | |||||||||||||
7 | 1bp1A | 0.10 | 0.05 | 1.72 | 1.15 | CNFpred | ------------------------------------------------------PGVVVRISQKGLDYAS-RIKIPDYSDSFKIKLGKGHYSFYSMDIREFQLPSSQISMVP--NVGLKFSISN----------------------------ANIKISGKWKAQKRF--LKMSGNFDLSIEGMSISAD----------LKLGSNPGKPTITCSSCSSHINSVHVHISK---------------------------------------------------- | |||||||||||||
8 | 5vtgA | 0.11 | 0.05 | 1.81 | 0.70 | HHsearch-2 | -------------------------------------------------PNLFTLDGRVDVPWARIVVHD-----------------------------PIN---------------SNLIVHVGNN------------V------RIDAFGLKARLTGDLNVVQDKQ--GLGLNGQINIPEGRFHAY--GQDLIVRKGELLFSGPYLNIEAI-RNP-----------DATEDDVIAGVRVTGLADEPKA-EISPAML---------------------- | |||||||||||||
9 | 5ny0A | 0.09 | 0.08 | 2.99 | 0.94 | Neff-PPAS | --------------DGNGGIFIHNTKSYTVNLTIEKATLYNQSQYGFVHMNDEG-TDNITYKNITAYGGTLWSQTHVGTKTLSLEGTVNFYSVPSYTVGG---QTYSTDAFKIGDTTPAIYVSNEINIA-------------------DNANIALENSTKIDIWMIADIGIHPHTTALTINNATLTMENGNNSALNIKLDGDTSNSFTVGEGSTVKLSAKVDNVRILPYEDSNTANVSFAKGSDVTLHAGTGSNLRMGASISNQIDFNGKATFIKDSEFD | |||||||||||||
10 | 5vtgA | 0.12 | 0.06 | 2.01 | 0.77 | HHsearch | ------------------------------------------------------------------------PNLFTLDGRVDVPW-------------------ARIVVHD--PINSNLIVHVGNN------------V------RIDAFGLKARLTGDLNVVQDK--QGLGLNGQINIPEGRFHAY--GQDLIVRKGELLFSGPYLNIEA-IRNP-----------DATEDDVIAGVRVTGLADEPKAE-IFSPAML--------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |