>PF12736 (281 residues) LPTLARLSSGEYIEGLTDQDLLLIHSCRQWTTVTAHSLEEGHYVIGPKIDIPLQYLGKFK LLDQDRDVREPVQYFNSVEEVANVFPDRVFVMEAITFSVKVVSGEFSEDSEVYNFTLHAG DELTLMGQAEILCAKTVKEKSRFNTLLRKLGKTSTLSKQVKGKMPCLICMNHRTNESLSL PFQCRGKFSTRSPLEIQMQEGEHTIRSIIEKVRLPVNVTVPSRPPRNSYDLHCIREGHRY KLVSIISKTVVLCCIIRKDAIIPLHFLLLSDMPRFVLPEGL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | LPTLARLSSGEYIEGLTDQDLLLIHSCRQWTTVTAHSLEEGHYVIGPKIDIPLQYLGKFKLLDQDRDVREPVQYFNSVEEVANVFPDRVFVMEAITFSVKVVSGEFSEDSEVYNFTLHAGDELTLMGQAEILCAKTVKEKSRFNTLLRKLGKTSTLSKQVKGKMPCLICMNHRTNESLSLPFQCRGKFSTRSPLEIQMQEGEHTIRSIIEKVRLPVNVTVPSRPPRNSYDLHCIREGHRYKLVSIISKTVVLCCIIRKDAIIPLHFLLLSDMPRFVLPEGL | |||||||||||||||||||
1 | 3i1cA | 0.09 | 0.08 | 2.98 | 0.67 | SPARKS-K | GAAGPVFD--------KNGDFYIVAPYVEVGEILRIDLKTGKKTKPEVCQCDRDMRLGLLVVQTDGTFEEIAKKMQGCAYCAFDYEGNLWITAPAGEVAPADFTIFTTDGQMIQVDTAFQAPAGIAVRHM-----------------------------NDGRPYQLIVAEQPTKKLWSYDIKGPAKIENKKVHIPGTHKGGAAGMDFDEDNNLSSHIEVFGPDGGQPKMRIRCPFEKPSALHFKPQTKTIFVTEHENNAVWKFEWQRNKKQYCETLKFGI | |||||||||||||
2 | 5z7dA | 0.11 | 0.10 | 3.75 | 0.59 | FFAS-3D | --MVLTATDPFEYESPEHEVKNMLHATSQYFHVKVFNINLKEKFTKKNFIIISNYKGILEINETEAAPDQMIEVPNSIIRNANASPKICVFYGVFTLHKKTVNRKNKDGSGSIEVVGKEGDKLHLFCFHLKTIDRQPKLVCGEHSFIKISKRGNVPKEPAKEETEPFTYDLKEDKRMFHATVATETEFFRVKVKSKFIPRNIIAINTLRQRANATPKISYLFSQARGTF------VSGEYLVNKKTERNKFIYYGIGDDT-GKMEVVVYGRLTNVRCEPG- | |||||||||||||
3 | 3qwxX | 0.14 | 0.06 | 2.06 | 0.25 | HHpred | --------------QVSIGT-FLMRDSSRGEYSLTVREADGN--AVCHYLIERGEDGGVKIA---------NQSFPDIPALLNHFKMLAAYKKPIIEVVVGFTGE--RE---TDLPFEQGERLEILSKTN---QDWWE------------------------------ARNAL-GTTGLVPANY------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 3i1cA | 0.11 | 0.11 | 3.83 | 0.70 | MUSTER | EPLFTKVTEDPGAAGPKNGDFYIVAPYVEVNGKPAGEILRIDLKTGKKTVICKP--------EVNGYGGIPIRDANQL--FVADMRLGLLVVQT-DGTFEEIAKKDSEGRRCAYCAFDYGNLWITAPAGEVAPADFTISLQEKFGCFTTDGQMIQVDTANDGRPYQLIVAEQPTKKLWSYDIKGPAKIENKKHIPGTHKGGAAGMD-FDEDNNL--HIEVFGPDGGQPKMRIRCPFEKPSALHFKPQTKTIFVTEHENNAVWKFEWQRNKKQYCETLKFGI | |||||||||||||
5 | 4l6pA | 0.10 | 0.07 | 2.63 | 1.15 | CNFpred | --------------------LVNFQCKEDGIIAQAVDD----RVLLVSLEIGVEAFQEYRCDH-------PVTLGMDLTSLSKIL-DTLTLIAPDSIILLFEDT---KKDRIAEYSLKL-LQYDSTLSLPSS---------EFSKIVRDLS-----------LSDSINIMIT--KETIKFVASGSVIIKPFVDMEHPETSIKLEMDQ---PVDLTFGAKYLLD------IIKGSSLSDRVGIRLSSEAPALFQFDLK---SGFLQFFLA------------ | |||||||||||||
6 | 1dbfA | 0.10 | 0.04 | 1.43 | 0.39 | HHsearch-2 | ---------------------MMIRGIRG-----ATTVERD-------------------------T---EEEILQKTKQLLEKIPELLSATPDLHAVFPAKA--VRELSGWCQEMDVTGGCIRVMMTVQT-----DVPQDQIRHVYLEKAVVL-RPDLSLTKNTEL------------------------------------------------------------------------------------------------------------------ | |||||||||||||
7 | 2w0cL | 0.09 | 0.08 | 3.17 | 0.93 | Neff-PPAS | --VKKKLAAGEFAETFKNGNIIKAVGELVLRAYGADGGEGLRTIVRQGVSIKGMNYTSVMLHTEYDVNSFQIPLRDGVRELLPEDASRASIKSPVDIWIGGENMTALNGIVDGGRKFEAGQEFQIFGSVNYWVSDEEIRVFKEYSARAKYAQNEGRTALEANNVPFFDIDVPPELDGVPFSLKARVRHKSKGVDGLGDYTSISV----------KPAFYITEGDETTDTLIKYTSYGSTGSHSGYDFDDNTLDVMVTLSAGVHRVFPVETELDYDAVQEVQ | |||||||||||||
8 | 4o4aA | 0.13 | 0.06 | 2.09 | 0.78 | HHsearch | ------------------------------------------ETTDTIYLIPEEYEGDLIVVYNVPGA--ELLPKEEEFSVVTFAADGTAVTSTKNK-----FGTVNKEGQ--RTKIDSSCI-HFSST-------------------------GSRTE-NSWEFPFANLEVTR-TA-------CSQEFSANGREVPENQEHKRDLQRIQERYNK------------------------------------------------------------------- | |||||||||||||
9 | 2ebsB | 0.11 | 0.11 | 3.84 | 0.61 | SP3 | LNRTTG-AFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGVTFGEVWRQNRTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDRDPGPALDSIYLSTDAGATWKDVTQLSSPSNLEGNWGHPTNAARYKDGTPVPWLDFNNGPQWGGYGAPHGTPGLTKFGWWMSA--VLIDPFNPETGATIWATDTLSRVEK--------DWAPSWYLQIDGIEENAILSLRSPKSGAALLSGIGNISGMKHDDLTKPQKMFGAPQFSNL | |||||||||||||
10 | 3n7xA | 0.12 | 0.11 | 3.81 | 0.87 | PROSPECTOR2 | GP------DPHRCLQFNTGDSIHITFQTR-RYFEFDAANDGNFDGKNLYCLPLHWMNLYYGLKSSDSSATETQRYKMVKSMMKTYGWKVHKAGVVMHSMVPLMKDLKVSGGTSFETLTFTDTPYLEIFKDTTGLHNKETDVTLAKWIQNPQLVTVQSTAANYEFGFMEQMRTGDRKAYTIHGDTRNWY----GGEIPTTGPTF----------IPIKWDKPSLGNLVYPADHHTNDWQQIKLGCRVQADFFLHLEVRLPPQQYLHAPCTGQLNKCYIMHTN | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |