>PF12632 (289 residues) LLAFVSALLMLPSWWKESSWLLWGLVLLVYAILRVWGTWRTAKLQMSLRKYCLQLEETVA NSRAFTNLVRKALRLIQETEVISRGFTLVSAACPFNKAGQHPSQHLIGLRKAVYRSVRAN FRASRLATLYMLKNYPLNSESDNVTNYICVVPFKELGLGLSEEQVSEEEAHNLTDGFSLP ALKVLFQLWVGQSSEFFRRLVLLLSPANASPKPLISPERLPHHILSDVTQGLPHTHAACL EELKRSYEFYRYFETQHQSGFERTTRTKQKSKELNSLHTAVRSLQLHLK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | LLAFVSALLMLPSWWKESSWLLWGLVLLVYAILRVWGTWRTAKLQMSLRKYCLQLEETVANSRAFTNLVRKALRLIQETEVISRGFTLVSAACPFNKAGQHPSQHLIGLRKAVYRSVRANFRASRLATLYMLKNYPLNSESDNVTNYICVVPFKELGLGLSEEQVSEEEAHNLTDGFSLPALKVLFQLWVGQSSEFFRRLVLLLSPANASPKPLISPERLPHHILSDVTQGLPHTHAACLEELKRSYEFYRYFETQHQSGFERTTRTKQKSKELNSLHTAVRSLQLHLK | |||||||||||||||||||
1 | 5xg2A | 0.07 | 0.06 | 2.37 | 1.09 | FFAS-3D | ----------------------------AIVRWGKRKEKLIEEIRAREEERNALVVRLGEIDRTFAVAREEFDTVVKELEEARK-------------SLYEGEARIKRAEEEKEREILTGEARLPGLRERAEN---LRRLVEEKRAEISELERRLSSITSQSFELRIKLSD---LEKELELARKDLEKVLAEERAVREEIEVA---------------KRRINELDTLIERERGELAKLRGRIERLERKRDKLKKALENPEARTEKIRAVEKEIAALREELSRVEGKLE | |||||||||||||
2 | 2pffB | 0.14 | 0.12 | 4.28 | 1.02 | HHsearch-2 | LVPTASFFIASQLQEQEPEPTTPAELVLNL-CLTEFCYLEGNDIHALAAKLLQENDTTLVKTKE---LIKNY---ITARIMAKRPFDKKSNS--ALFRAGNTDDYFEELRDLYQHVLVGDLIKF---SAETLSELIR-TTLDAEKVFTQGLNILEW---------LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLFTPKGATGHSQETDSWSFFVSVRKAITVLFFIGVRCYEALEDSLENNEGVPSPMLSNLT-QEQVQDYVNKTNSHLPAGKQVEISLV | |||||||||||||
3 | 5cwiA | 0.09 | 0.06 | 2.40 | 0.74 | SPARKS-K | AESEAREARSKAEELHPDSQAARDAQKLASQAEEAVKLACELAQEHIAKLCIKAASEAAEAASKAAELAQRAIKLASQAAEAVKLCELAQEHPNA------------DIAKLCIKAASEAAEAASKAAELAQRH------------------------------------PDSQ----------AARDAIKLASQAAEAVKLACELAQEHPNA---------DIAKKCIKAASEAAEEASKAAEEAQRH------------PDSQKARDEIKEASQKAEEVKERCER-- | |||||||||||||
4 | 4whjA2 | 0.09 | 0.08 | 2.99 | 1.06 | FFAS-3D | ---------------QEADKMFFLIEKIKMFNQDIEKLVEYNKIREDFKNWVGILATNTQKVKNI------IHEEVEKYEKQAAAAELLGFV-NYKTFEIIVHQYIQQLVEPALSMLQKAMEIIQQAFINVAKKHFGEFFNLNQTVQSTIEDIKVKHTAKAENMIQLQFRMEQMVFSFTEIGIHLNAYFLETSKRLANQIPFII----------------QYFMLRENGDSLQKAMMQILQEKNRYSWL----LQEQSETATKRRILKERIYRLTQARHALCQFS---- | |||||||||||||
5 | 2pffB | 0.12 | 0.11 | 4.01 | 0.31 | HHpred | -VGQFDQVLNLCLEFENCHALAAKLLTLVKTKELIKNYITARIMAKPRANTDDYFEELRDLYQTYHVLVGDLIKFSAETELI-RTTLFTQGLNILEWLENTPKDYLLSIPISCPLIGVIQLAHYV-VTAKLLG-FTP----GELRSYLKGATHSQ--GLVTAVAIAE---TDSWESFFVSVRKAITVLFFIGVRCYEAPSILEDSLENNEGVPSPMLSILTQEQVQDYVNKTNSHLPQSLYGLNLTLRKAKPSRIPERPASPFHSH------LLVPASDLINKDLVKN- | |||||||||||||
6 | 2yfaA | 0.11 | 0.09 | 3.15 | 0.77 | MUSTER | ----------------------GSHMGDIGQLNKDLTDLRIARLQYMIANGDTAAANTLAKLDAFSKQQAYLATTFKSPENVKL----------LGELG-----DTISAYKLSLNKMRQGYDATRAARVSMDSS--AIRADQAMDALSQEV----MARPEADSVRLAQYQLISKARQQLLQVRIDVRGYIAENSSANEQAALRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTS----------RAEMTVQGADIVKRSDALYQIQLER- | |||||||||||||
7 | 3gjxA | 0.07 | 0.06 | 2.54 | 0.84 | CNFpred | LGSILKTNVRACKAVGFVIQLGRIYLDMLNVYKCLSENI-IRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLID--YQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINK-DFEEYPEHRTNFFLLLQNSHCFPAFL--AIPPAQFK--------LVLDSIIWAFKHTMRNVADTGLQILF--------------TLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAG--------------LTMHASILAYMFNLVE | |||||||||||||
8 | 1vt4I3 | 0.13 | 0.06 | 2.18 | 0.70 | HHsearch-2 | -------------------------------------------------------------------------------------------------------------------------------EYALHR--SI-VDHYNIPKTFDSDDLIPPYDQYFYSHIG----HHLKNIE-HPERMTLFRMVFL----DFRFLEQKIRHDSTAWNASILNTLKFYKPYIDNDPKYERLVNAILDFLPKIEENLICSK-------YTDLLRIALMAEEAIFEEAHKQVQRGGG | |||||||||||||
9 | 4ci6B2 | 0.09 | 0.08 | 3.15 | 0.93 | Neff-PPAS | RELSDLLRTHLSSAATKQLDMGVVLSDLDTMLVALDKAEREGGVD-------------KDQLKSFNSLILKTYSVIGAYI-------LSIVEPSLQRIQKHLDQTHSFSDIGSLMRAHKHLETLLEVLVTLSQ----QGQPVSSETYSFLNRLAEAKVT-LSQQLNTLQQQQESAKAQLSILINRSGSWADVARQSLQRFDSTRPVVKFGTEQY---TAIHRQMMAAHAAITLQEVSEFTDDMRNFTADSIPLLIQLGRSSLMDEHLVEQREKLRELTTIAERLNRLER | |||||||||||||
10 | 4c7nB | 0.14 | 0.02 | 0.83 | 0.51 | HHsearch | ------------------------------------ASAIVDYERKIQRI-QQRVAELENTLKKLEHENRHLEQRAQELEQQIRAHAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |