>PF12312 (258 residues) MGKFYYSSRRLACWAAGKNPHLGGSVEQWLAAIETDPSFRQTVKEDVQLNRERLDAIRMF SWKLGYGPIDNPEKCNWHFVLTGEVSAQPTQPVKADEVVGVPQPKKVVIPSPPPPPAPYF RAVGAFAPTRSGFIRATVERLTREREESRAAALFAELPLEYPQGAPLKLSLAMKFAMLKH TTWRKWYDTSDERLLEAHPGGPCLPPPPPIQSPPSFYERRREFCRVKSCARAFALETSLG LNRAWVGLVDIPSTSVCC |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | MGKFYYSSRRLACWAAGKNPHLGGSVEQWLAAIETDPSFRQTVKEDVQLNRERLDAIRMFSWKLGYGPIDNPEKCNWHFVLTGEVSAQPTQPVKADEVVGVPQPKKVVIPSPPPPPAPYFRAVGAFAPTRSGFIRATVERLTREREESRAAALFAELPLEYPQGAPLKLSLAMKFAMLKHTTWRKWYDTSDERLLEAHPGGPCLPPPPPIQSPPSFYERRREFCRVKSCARAFALETSLGLNRAWVGLVDIPSTSVCC | |||||||||||||||||||
1 | 3k1qB | 0.13 | 0.13 | 4.54 | 0.70 | SPARKS-K | PSEFGYGSTLQANLFIPSNPTYDSAMSNWISTTIANDLTRRTMTGVMTAMRQCPTELSVLASVTVTPPFQVQNDVITNVLVARVDPAQRGDAAVDATHATFAAALPVDCGQTETNLIPSHHYGKAFAPASNAMFTRNQRAVITREAFVCARSAVAQCPLDALRQFDVTSAAAAEIMHAVNDAFKTAFDLDGDGLALYDPRIADLVVREHVPPGPSH----IHRALQQVESTFMAEMNLFNVARGNLYLVQTATNGNWS | |||||||||||||
2 | 3l9oA2 | 0.12 | 0.09 | 3.27 | 0.73 | FFAS-3D | ------------------------NVKEYHEIEQAIKGYREDVRQVVTHPANALSF-------LQPGRLNGKDNYGWGAVVDFAKRISAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPTLPEGIRPAEESICAVSIKSIGNSGQKETVGKSLREVNRRFPDGIPVL--DPVKNMKIEDEDFLKLMKKIDNTKLSSNP----------LTNSMRLEELYGKYSRKHDLHEDMKLKRKI------------------- | |||||||||||||
3 | 2rakA2 | 0.15 | 0.08 | 2.74 | 0.35 | HHpred | ----------------------------------------------------------TEQYLLAKQLAKPK---EKIPIIVGDYGPM-WVYPTSTFDCVVADPRKGSKMY--GL-KSYYQLT-----PTNT---------------------------N------RSVNHRKHFDWLY------------ERLLVKFGSAIPIPSLPDKQFEEEFIKMRMERLQAWMTCEQQFLNFRKEKRKAEAGTMEPEAP---- | |||||||||||||
4 | 2z6bA | 0.10 | 0.10 | 3.56 | 0.62 | MUSTER | LGTYIVRE--------KPNRLEGGQYPR----LGNDTNVLNQGGEVGYDSSSNVIQDSNLDTPLSEIPTDDNPNMSMAEMLRRDEGLRLKVYWDTEGYPTIGIGHLIMKQPVRDMAQVLSKQVGREITGNPGSITMEEATTLFERDLADMQRDIKSHSKVGPVWQAVNRSRQMALENMAFQMGVGGVAKFNTMLTAMLAGDWEKAYKAGRDS--LWYQQTKGRASRVTMIILTGNLESYGVEVKTPARSLLAMAATVA | |||||||||||||
5 | 3zcnA | 0.09 | 0.07 | 2.82 | 0.71 | CNFpred | ---------LLEAQGSSEIENIVTTTDKLFQYAQEDSQADPMTKEALRYRTALYQCFTQLS----NRPLCVTTALEICSTIKSVQMDVRKVPG---TSLTNQATGEVIYTPPAGESRDLLSNWEAFLHN-DPLIKMAMAHYQFE-GNGRTGRVLNILYLIDQQLLSAPILYLSRYIVAHKQDYYRLLLNVTTQQ-----------------EWQPWIIFILNAVEQTAKWTTHKIAAARELIAHTTEYV--------- | |||||||||||||
6 | 2pffB | 0.18 | 0.17 | 5.55 | 0.37 | HHsearch-2 | ADDEPTTPALNLCLTEFENCYLEGNAAKLLQENDTTLVKTKELIK--NYITARIMAKRPFDKKSNSALRAVGENAQLVAIFGGQGNYQTYHVLVAEKVFTQGLLEWLENPSNT-PDKDYLLSIPISCP-LIGVIQLAHY-------VVTAKLLFLRSYLKGATGHSQGLVTA--VAIAETDSWESFFVSLFFIGVRCYEAYPNTSLPMLSISNLTQEQVQDYVNTNSHLPAGKQVEISLGLNLTLRKAVASPFHSHLL | |||||||||||||
7 | 4e40A | 0.10 | 0.09 | 3.29 | 0.62 | Neff-PPAS | -SDDVAAACELRAQLAGVSIASGILLRPAVIRNATTEFSRKKSEDILAKGGAAVERASAAVDRVSG-------------------------LDKTNETAQKVRKAAAVAHHALEHVKEEVEIVAKKVNEIIELTAGATEHAKGAKANGDASAVKVSNLLARAKESE---NQYVKEAAEECSESTNY-DVTAKSLAAALDKLPGVKEDNAVKTTDNLDKDVKSVEQRAEELETALEKAERQLEKAEKAAEEAETESSKV | |||||||||||||
8 | 4akvA | 0.14 | 0.06 | 2.11 | 0.46 | HHsearch | ----------------------------------------------------------------------------MYSIEMGPRG-----PQ---WKANPHP-FACSVEDP-----ISYKLT-----PTH----------------------------------------------AASPVYRRYKDWLYNRLLHKFTV-ISVPHLP--EKQEDFIEKRKRRLILWMMFQHFLSCLDDQWKASFLLTFQIPTEHQD- | |||||||||||||
9 | 3cvgA | 0.09 | 0.09 | 3.21 | 0.46 | SP3 | --EDVYDGPRIGNGGAGQSGLVKELADAFIKSKVDSKSDTTVTINYLKDGISPVAERISIKHGISESPS--------YYAFRDHFLGPPSNPAKLSGDSDIADFSKHDAAEAGNTKPPV-RFL--SRYDKSA-TNIKEAELWLSIGQVPWATAYSTWYHQYITF----PIQALTAAILLRTDYGTYLSIPRGLRDQVIYKKGTNDADDPLRAKNAEAKEFAKWLVSKEGGQKVIEGF--KKDGQQLYSPAPYR----- | |||||||||||||
10 | 5ugqA | 0.11 | 0.11 | 3.90 | 0.87 | PROSPECTOR2 | VERFPATGDKALGVFQTLPAIWCNSDADNDRLRAEPQVDYSREGVAHIENETKQFVGRCVDKGDGAVDPNADPIEAFNNYAADCAKNAGCPLGADPAVDPDNPRISRPARTKDPRGLSYSDAIVGTIALYSPNLWQHLTDGLSELVDNRGDTLLALADYRRDSHGRYNNSGDARVAINPVTDRDKVIDEDRRAREIAPFSYGKFTPVPPTSQPHAVYKAGVDLANQSCIDEYVT---------AYLIGGTTPPSGAKC | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |