>PF12291 (254 residues) MIQYGLPILYVIFLWWFSTGAIIYLDGLPQRTYRWSMLGASVLAGIALYALALTAHQETL FGAYVAFTGAIILWGWVEMSFLMGMITGSRRSRCPEGALGWRRFIYAVQAILYHEFALII AALAIVLVTWGGANMVGLYTFLILWVMRTSTKLNVFLGVRNLNEEWLPDHLRYLESYFRK KPMNLLFPISVTASTIVAVLIVQTAMDPSATTHQVAGATFLAILMILAILEHWFLVLPLP SQALWNWALRSRQP |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | MIQYGLPILYVIFLWWFSTGAIIYLDGLPQRTYRWSMLGASVLAGIALYALALTAHQETLFGAYVAFTGAIILWGWVEMSFLMGMITGSRRSRCPEGALGWRRFIYAVQAILYHEFALIIAALAIVLVTWGGANMVGLYTFLILWVMRTSTKLNVFLGVRNLNEEWLPDHLRYLESYFRKKPMNLLFPISVTASTIVAVLIVQTAMDPSATTHQVAGATFLAILMILAILEHWFLVLPLPSQALWNWALRSRQP | |||||||||||||||||||
1 | 5y78A | 0.09 | 0.08 | 3.17 | 1.09 | SPARKS-K | TLVHTLKVGFYFFLWYFFNFIFNIANKRTLNMWKYPWVLSTIQLGVGALYCTFLWVLKLIKALIWPSLGHTLGHAATCMSFSLVAI-------------SFTHVVKSAEPVFGAVGSALVLGVALSAATELTFTITAMISNVAFVTRNITSKFTMVDF--KNEKTLIAQNTYALITIIFPPLVSGSIMFCSLFYHLYNEVSYLCLDNVSPVSFSIGNTIKRVIIIFGSILVFRTPVTRLNFIGSTIAIIGTMLY | |||||||||||||
2 | 3rkoB | 0.11 | 0.09 | 3.39 | 1.29 | CNFpred | --MLMWATLMLLGGAVGKSAQQTWLADAMGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQT-------------DIKRVLAYSTMSQIGYMFLALGVQAWDAA-----IFHLMTHAFFKALLFLASGSVILACQNIFMGGLRKSIPLVYLCF------LVGGAALSAAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFH---------------- | |||||||||||||
3 | 6gs1A2 | 0.08 | 0.07 | 2.93 | 1.35 | SP3 | ---QEVARMALGVVAFGIVVIFGKEAFAMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNPEQYQALNPFWIIIGSPILA----------AIYNKMGDTLPMPTKFAIGMVMCSGAFLILPLSDAGIVSVSWLVASYGLQSIGELMISGLGLAMVAQLVPQR--------LMGFIMGSWFLTTAGANLIGGYVAGMMAVPNVTDPLMSLEVYGRVFLQIGVATAVIAVL---MLLTAPKLHRMTQD | |||||||||||||
4 | 5k7vA | 0.13 | 0.11 | 3.84 | 1.09 | SPARKS-K | EKAVAEAIEEIARLATAAIQLIEALAKASEEFMARAISAIAELAKKAIEAIYRLADDTFMARAIAAIANLAVTAILAIAALAS-------------NHTTEEFMARAISAIAELAKKAIEAIYRLAD--NHTTDKFMAAAIEAIALLATLAILAIALLASNHTTE-------------------EFMAKAISAIAELAKKAIEAIYRHTSPTYIEKAIEAIEKIARKAIKAIEMLAKNITTEEYKEKAKSAIDE | |||||||||||||
5 | 6bugC | 0.12 | 0.11 | 3.88 | 0.90 | FFAS-3D | ---QILALLFYIVWQIIWVYSYKRYRSQRDNKWVFYLHSFLVVLPLILVKVEPTINGTQLGISYLTFRAVGMIIEMRDLRFMLTFTSGP--------IDRFKRFNEDYQNMLEQAVKYIMLGFLYKFVLAGGIFNLPTLGVMYVYGFDLFFDVSNLMGIKSPINFDKPFISRDMKEFWN----RWHMSLSFWFRDFVFMRLVIVLMRNKVFKNRNTT-SNVAYIINMMVMGFW----HGITWYYIAYGI----- | |||||||||||||
6 | 2r6gF | 0.15 | 0.11 | 3.58 | 0.27 | HHpred | -WTVVFSLITVFLTVAVGMVLACLVQWEALRVYRVLLPYAVPSFISILIFKGLFNQSFGEINMTTARTMLIIVNTWLGYPYMMILCMGLLKAIAMDGAGPFQNFFKITLPLLIKPLTPLMIASFA--FNFN--------NFVLIQLLT--------NGGPDGYTDLLVNYTYRI--AFEGQDFGLAAAIATLIFLLVGALAI---------------------------------------------------- | |||||||||||||
7 | 5ezmA1 | 0.11 | 0.11 | 3.81 | 0.85 | MUSTER | GLGEWQARLAVALSGLLGIGVSMMAARR--WFGARAAAFTGLALLAAPMWSVAAH--FNTLDMTLAGVMSCVLAFMLMGQH------PDASVAARRGWMVACWAAMGVAILTKGLVGIALPGLVLVVYTLVTRDWGLWRRLHLALGVVVMLVITVPWFYLVSVRN--PEFPNFFFIHWQRRSGSVPLVIGGFLPWAGIFPKLWTAMRARFRPALMAGIWAIAIFVFFSILPGYIVPVPA-LGILAGVALDRL-- | |||||||||||||
8 | 3rkoC | 0.14 | 0.13 | 4.33 | 1.25 | CNFpred | LAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLMWILGGVIGVFLAI-----DMFLFFFFWEMMLVPMYFLIALWGHK--------ASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYWTFNYEELL-VEYLLMLGFFIAFAVKMPVV--LHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLG-KRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIA | |||||||||||||
9 | 5tj5A | 0.17 | 0.16 | 5.17 | 0.57 | HHsearch-2 | PTIVTFPFMFAIMF---GHGFLMTLALNEKEIFDMAFTGRYIILLMGVFSMLGTENALLFSNSYKMKLSI--LMGFIHMTYLANHL-DIIGNFIPGLLFMQGIFGYLSVCIVYKWAGLLNMLINMFLSPGTYPHQAKVQVFLLLMALVLLVKP-LHFKFVIHTIEFCLNCVSHTASYLR------LWALSLAHAQLSSVLWIQIAFG-FRGFVGVFMTWFALTCAVLVLMEAMLHSLRL----HWVESMSK--P | |||||||||||||
10 | 5do7A2 | 0.09 | 0.08 | 3.13 | 0.92 | Neff-PPAS | -KLAVITRLLQNLIMGLFLLFFVLRVRSNQDRVGLLYQFVGATPYTGMLNAVNLFPVLQKWQMMLAYALHVLPFSVVATMIFSSWTLGLHPE--------VARFGYFSAALLAPHLIGEFLTLVLLGIVQNPNIVNSVVALLSIAGVLVGS------GFL-RNIQEMPIPFKIISYFT---------FQKYCSEILVVNEFYGLNFTCAFTIEKTCPGATSRFTMNFLILYSFIPALVILGIVVFKIRDHLIS- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |