>PF12055 (284 residues) WHQKWRRPLRDSLDWLRDQLVKVYEETGRKFFTDPWAARDEYIHVMLDRSPVNVNRFFAR HQTRKLTGAEKVDALRLLEMQRHTLLMYTSCGWFFDELSRPEGTQILRYAARAIELAGDV AGVQLEKAFIRRLAAAPSNVEFFQNGAEVYRQLVIPAQVSMEQVAAHYAISSLFTSYSRD QRVYCYAVHQLDYQLQRLGNLTLAVGQIQLTSEITWESSHLIFAVLHLGGWDFHCCIRPF NGRRNYSQMKDSLFEALRQASAAQTILAMNRIFGDQSYSLQNLF |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | WHQKWRRPLRDSLDWLRDQLVKVYEETGRKFFTDPWAARDEYIHVMLDRSPVNVNRFFARHQTRKLTGAEKVDALRLLEMQRHTLLMYTSCGWFFDELSRPEGTQILRYAARAIELAGDVAGVQLEKAFIRRLAAAPSNVEFFQNGAEVYRQLVIPAQVSMEQVAAHYAISSLFTSYSRDQRVYCYAVHQLDYQLQRLGNLTLAVGQIQLTSEITWESSHLIFAVLHLGGWDFHCCIRPFNGRRNYSQMKDSLFEALRQASAAQTILAMNRIFGDQSYSLQNLF | |||||||||||||||||||
1 | 4cmrA | 0.10 | 0.07 | 2.60 | 1.16 | SPARKS-K | VSQLWKFAF-KLFRELNRAVRFGVITQGVSDIEKIKEFLVRYSRVFF-------REHYEYFTSVDYVEEADPSLALKLGRIYYLLLANHSCPRFWENIDRVTFGNVATISKALIELELYEENEERANYIFLEYKLLAKGLEGWETTEKAWFESLRSEKYNVVTRAALYVGKRDLPPDRSVAVPDTGHIPGEHGKWENKEWCEHKGKD----------------------------------------------------------------------------- | |||||||||||||
2 | 4cmrA | 0.15 | 0.10 | 3.22 | 2.97 | HHpred | VSQLWKFAF-KLFNRVRFGVIDL-RTQGVSDIEKIKEFREHYEYFELDTS----VDYV-E----PIHEA-DPSLALKLGRIYYLLLANHSCPRFWENIDRVTFGNVATISKALIELELYEENEERANYIFLEY--KLLAFPQWETTEKAWFESLRSEKYNVVTRAALYVGKRDLPPDRSVID-TLYD-----LEEAVP-----DTGHI------PGE------------------------------------------------------------------- | |||||||||||||
3 | 4cmrA | 0.14 | 0.10 | 3.47 | 3.68 | HHsearch-2 | VSQLWKFAF-KLFNRVRFGVIDL-RTQGVSDIEKIKEFREHYEYFELDTS----VDYV-E----PIHEA-DPSLALKLGRIYYLLLANHSCPRFWENIDRVTFGNVATISKALIELELYEENEERANYIFLEY--KLLAFPQWETTEKAWFESLRSEKYNVVTRAALYVGKRDLPPDRSVID-TLYD-----LEEA-----VPDTGH------IPGE--HGKW------ENKEWCEHKGKD------------------------------------------- | |||||||||||||
4 | 4cmrA | 0.14 | 0.10 | 3.47 | 6.04 | HHsearch | VSQLWKFAF-KLFNRVRFGVIDL-RTQGVSDIEKIKEFREHYEYFELDTS----VDYV-E----PIHEA-DPSLALKLGRIYYLLLANHSCPRFWENIDRVTFGNVATISKALIELELYEENEERANYIFLEY--KLLAFPQWETTEKAWFESLRSEKYNVVTRAALYVGKRDLPPDRSVID-TLYD-----LEEAVP-----DTGHI------PGE--HGKW------ENKEWCEHKGKD------------------------------------------- | |||||||||||||
5 | 4cmrA | 0.17 | 0.07 | 2.33 | 1.34 | SAM | VSQLWKFAF-KLFNRVRFGVIDL-RTQGVSDIEKIKEFREHYEYFELDTS----VDYV------PIHEA-DPSLALKLGRIYYLLLANHSCPRFWENIDRVTFGNVATISKALIELELYEENEERANYIFLEYK------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
6 | 1k1yA | 0.10 | 0.08 | 2.86 | 1.62 | HHpred | -IASYFE----MSEWLPAKQAKLFVEFVEQLKEEGK--FEKYRVFVRGGI---WKNFFFKYPESMLMVS--KAVRDNPEARKYILKAQCNDAYWHGVFGGIYVWENIIKAQRYLKPENKILDVDF-DGRAEMVENDGFIATKPHYGGSIFELSSKRKAVNYNDVLPRRQIRRELDWQL-RAILQPYEYEMIE------NGVKLWKIPARVEKKIELTGFIAKYRVLLEKPYKALFGVEI--------------------------------------------- | |||||||||||||
7 | 1k1yA | 0.09 | 0.08 | 3.05 | 1.71 | HHsearch-2 | PIASYFE----MSEWLPAKQAKLFVEFVEQLKEEGK--FEKYRVFVRGGI---WKNFFFKYPESMLMVS--KAVRDNPEARKYILKAQCNDAYWHGVFGGIYVWENIIKAQRYLKPENKILDVDF-DGRAEMVENDGFIATKPHYGGSIFELSSKRKAVNYNDVLPRRQIRRELDWQL-RAILQPYEYEMIE------NGVKLWKIPARVEKKIELDGFIAKYRVLLEKPYKALFGVEINLAVH---------------SVM----E-KPEEFEK-EFEVNDPY | |||||||||||||
8 | 1k1yA | 0.09 | 0.08 | 3.04 | 3.13 | HHsearch | PIASYFE----MSEWLPAKQAKLFVEFVEQLKEEGK--FEKYRVFVRGGI---WKNFFFKYPESMLMVS--KAVRDNPEARKYILKAQCNDAYWHGVFGGIYVWENIIKAQRYLKPENKILDVDF-DGRAEMVENDGFIATKPHYGGSIFELSSKRKAVNYNDVLPRRQIRRELDWQL-RAILQPYEYEMIE------NGVKLWKIPARVEKKIELTGFIAKYRVLLEKPYKALFGVEINLAVHS----------VMEKPE----------EFEK-EFEVNDP- | |||||||||||||
9 | 5cwpA | 0.12 | 0.08 | 2.86 | 0.77 | SPARKS-K | AQEAAERTGDPRVRELARELKRLAQEAAEEVKRDPSSDVNEALKLIVEEAAVRALEAAERTG----DPEVRELARELVRLAVEAAEEVQRNP------SSSDVNEALKLIVEAIEAAVRALERELVRLAVEAAEEVQRNPSS--------EEVNEALKKIVKAIQEAVESLREAEE---------------------------------------------------------------SGDPEKREKARERVREAVERAEEVQRDPSGWLE------------ | |||||||||||||
10 | 4cmrA | 0.13 | 0.08 | 2.81 | 0.95 | FFAS-3D | VSQLWKFAFKLFRELNRA-VRFGVIDLRTQGVSDIEKIKERYSRVFFREHYEYFELDTSVDYVEPIHEADPSLALKLGRIY-YLLLANHSCPRFWENIDTRVTFGNVATISKALIELE-LYEENEERANYIFLEYKLLALEGWETTEKAWFESLRSEVYNVVTRAALYVGKRDLPPDRS--------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |