>PF12027 (255 residues) MLKSEIEQCLSKITSNIRLCAFVIKIGIVDHVMSRLCRFYGSDSIKYCASHYHDPRVIDS ILIGLYGASYSDFSRMSYQVRSNIVYCVGKHGIAGVFKLHNSGFYSELLGMCYDFVHARG KGVKLQELCDFMKLSCSIQLGQMYHMMVKVKCSIGDEQSDIRKLVSQECSVGYLVYRSLL FGRYAYHVRKAFRHLYAPSDKNPVRTVSGLNIPHSLIRLNHRGIFTKIEHCINAEKMSFN VFVVDIVRHIDKLLL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | MLKSEIEQCLSKITSNIRLCAFVIKIGIVDHVMSRLCRFYGSDSIKYCASHYHDPRVIDSILIGLYGASYSDFSRMSYQVRSNIVYCVGKHGIAGVFKLHNSGFYSELLGMCYDFVHARGKGVKLQELCDFMKLSCSIQLGQMYHMMVKVKCSIGDEQSDIRKLVSQECSVGYLVYRSLLFGRYAYHVRKAFRHLYAPSDKNPVRTVSGLNIPHSLIRLNHRGIFTKIEHCINAEKMSFNVFVVDIVRHIDKLLL | |||||||||||||||||||
1 | 4xriA | 0.11 | 0.10 | 3.56 | 0.74 | SPARKS-K | SLSTVILQRLEETLPLILEDMQTSLCTVLQATVQRLDKEIAPQGDRIMQVLLSVPEGVFAAISALANAMEEEFAKYMEAFAPFLYNALGNQE--------EPSLCSMAIGLVSDVTRSLGERPYCDNFMNYLLGNLKPAILQCFGDIASAIGGHFETYTIVAQVLQQAATITAMIDYVISLREGIMDAWGGIIGAMKTSN------------KTNVLQPYVESIFALLNSIANDPNRS-EALMRASMGVIGDLAD | |||||||||||||
2 | 3gs3A | 0.07 | 0.05 | 2.32 | 1.10 | FFAS-3D | --RAKVVDWCNELVIASP----STKCELL---------AKVQETVL-----GSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV----------KVELLPHVINVVSMLL-----RDNSAQVIKRVIQACG----SIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSFRREKLQEEGNNILDILLQFHGTTHIS-SVNLIACTSSLCTIA- | |||||||||||||
3 | 3wozA1 | 0.16 | 0.05 | 1.69 | 0.31 | HHpred | -------------------------------------TEDVAEVLNRCASNWSERK--EGLL-GLQNLLKRTLS--RIELKRLCEIFTR-FADPH------GKVFS-FLETLVDFIQVHKDDLQLTQLLK----------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 6n1zA | 0.10 | 0.09 | 3.36 | 0.69 | MUSTER | ESTHVLQPFLPSILDGIHLAASEVLNLVMETLCIVCTVSKICPFTIAIFLKYSNDPVVASLAQDIFKELSQIEACQGPMQMRLIPTLVSIMQAPA--DKIPAGLCATAIDILTTVVRNTKPPLLICQAFPAVAQCTLHTNATMQNGGECLRAYV----SVTLEQVAQWHD-EQGHNGLWYVMQVVSQLLD------PRTSEFTAAFVGRL---STLISKAGDQILRAILSKMQQAET--LSVMQSLIMVFAHLVH | |||||||||||||
5 | 4c0pA | 0.05 | 0.04 | 2.09 | 0.95 | CNFpred | VFLDRLAVIFRHTNP-HPCQKVIQEIPVLSETLNKHIVERCCRCLRFAVRCVGSAALLQPLVTQMVNVYHHQHSCFLYLGSILVDEYGMEEG----CRQGLLDMLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQ-----VVIPILQWAIAS-----TTLDHRDANCSVMRFLRDLIHTGVANDHEEDFELRK-ELIGQVMNQLGQQLVSQLLHTCCFC--LPPYTLPDVAEVLWEIMQ | |||||||||||||
6 | 1vt4I3 | 0.11 | 0.06 | 2.24 | 0.61 | HHsearch-2 | ---------------------------------------------------------------------EYA---L---HRSIVDHYNPKFDSDDLPPYLDQYFYSHIGHHLKNIEHPE---RMTLFRMVFLDFRFLEQ------K--IRHDSTGSILNTLQQLKFYKPYI---CDNDPKYERLVNAIL----DFL--P-KIEENLICSKYT-DL--------------LRIALMAEDEAIFE----EAHKQVQR | |||||||||||||
7 | 3ea5B2 | 0.05 | 0.04 | 2.10 | 0.87 | Neff-PPAS | -VADMLMGLFFRLLEKDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARSNIGADFIPYLNDIMALCVAAQNTKPETLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAED-PQLYSEDATSRAAVGLIGDIAAMFPDGS---------------IKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR | |||||||||||||
8 | 4kxfK6 | 0.19 | 0.04 | 1.27 | 0.69 | HHsearch | -----------------------------------------------------------------------DMTEDSDLIEAVLV---P-------------DQ---VERLWAQIQ----ESRCLRNLPLFVVITCAIQMGRQE-----F-QA-----------------------H------------------------------------------------------------------------------ | |||||||||||||
9 | 4xriA | 0.06 | 0.06 | 2.67 | 0.71 | SP3 | PEEKVLEPIVKTG---MQPLIAMMEDESIQVRDSTA--YALGRITEACSEAIDPNTHLEPLIRSLFNGLMNSPKMAASCCWALMNIAERFAGEPGAAQNPLTPHFNQSVTNLLTVTAPMNGDSTVRTAAYEVLSVFVQNAANDSLSAVASLSTVILQRLEETLPLQQQVVSVEDKLILEDMQTSLCTVLQATVQRLDKEIAPQGDRI--MQVLLQILSTCGGKVFAAISALANAMEEEFAKYMEAFAPFLYNALG | |||||||||||||
10 | 5cwmA | 0.08 | 0.06 | 2.52 | 0.87 | PROSPECTOR2 | DPEDELKRVEKLVKEAEELLRQAKELEKALRTAEEA--AREAKKVLEQAEKEGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRV----------AEEAARLAKRVLELAEKQGDPEVALRAVELVVRVAELLLRIALERALRVAEEAARLAKRVLELAEKQGD-------PEVARRAVELVKRVAELL------------------ERIARESGSEEAKERAERVRE-------EARELQERVKELRR | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |