>PF11981 (287 residues) REALARLGLHALVRFDSVAPPEDGERRLYESLALLLENARPQLERLIADQQAQRQARQQS AARLIAELLIDCASCRRSVVSEAEQEQQAINELRKAVRQREQRCVEALLKLYAFRPQDAA ASDLPLLDGRWGDDLFNPETLKQLGVRVGGGIAAGAAAGAGVDLLVGGLTLGAAALAGAI AGGALQTARSYGSRLMGKIKGQRELTVDDSVLRLLALRQRQLLHALNARGHAAMDSIQVA TPQDKSWREGKLPEPLNKARAHPQWSSLNPYPKLSQAERQEQIEALA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | REALARLGLHALVRFDSVAPPEDGERRLYESLALLLENARPQLERLIADQQAQRQARQQSAARLIAELLIDCASCRRSVVSEAEQEQQAINELRKAVRQREQRCVEALLKLYAFRPQDAAASDLPLLDGRWGDDLFNPETLKQLGVRVGGGIAAGAAAGAGVDLLVGGLTLGAAALAGAIAGGALQTARSYGSRLMGKIKGQRELTVDDSVLRLLALRQRQLLHALNARGHAAMDSIQVATPQDKSWREGKLPEPLNKARAHPQWSSLNPYPKLSQAERQEQIEALA | |||||||||||||||||||
1 | 5k7vA | 0.13 | 0.10 | 3.64 | 0.86 | SPARKS-K | -----------------------IEEVVAEMIDILAESSKKSIEELARAAEKAVAEAIEEIARLATAAIQLIEALAKNLAS-----EEFMARAISAIAELAKKAIEAIYRLAD----------------NHTTDTFMARAIAAIANLAVTAILAIAALAISAIAELAKKAIEAIYRLAAAIEAIALLATLAILAIALLASNHTTEEFMAKAISAIAELAKKAIEAIYRLAD--------NHTSPTYIEKEAIEKIARKAIKAEMLAKNITTEEYKREKAKEAIKRLE | |||||||||||||
2 | 1cunA | 0.10 | 0.07 | 2.67 | 0.91 | FFAS-3D | ---------------------FRDMDDEESWIKEKKLLVLTGVQNLRKKHKR-LEAELAAHEPAIQSVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL--------------------------EESLEYQQFVANVEEEEAWINEKMTLVAS-----EDYGDTLAAIQGLLKKHEAFETDF--------------TVHKDRVNDVCANGEDLIKKNNHHVENIT---------------AKMKGLKG--KVSDLEK---AAAQRKAKLDENSA | |||||||||||||
3 | 2pffB | 0.11 | 0.10 | 3.62 | 0.51 | HHpred | -KFLGYVEPSKVGQFDQV------LNLCLTEFENCYLEG-NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSDELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTLNIL--EWLENP-SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLQGLVTAV-----AIASWESFFVSVLFIGVRCYEAYPNLPPSILEDEQVQDYVNKTNSHLPAGKQVEISLVNGAVVSGPPQSLNLTLRKAKSGLDQSRIPFSE--------------- | |||||||||||||
4 | 1st6A | 0.09 | 0.09 | 3.42 | 0.70 | MUSTER | DAWASKDTEAMKRALALIDSKMNQAKGWLRAGEQAIRQILDEAGKAGELCAGKERREILGTCKTLGQMTDQLADLRARGQGATPMAMQKAQQVSQGLDLLTAKVENAARKLEAMTAKKIDAAQNWLADPNGGSEGCEEPKERDDILRSLGEISALTAKLSDLRRHGKGEARALAKQIATSLQNLQSKTNRAVANTRPVKAAVHLEGKIEQAQRWIDGVGQAAIRGLVAEGRRLANVMMGP-------YRQDLLAKCDRVDQAAQLADLAARGEGESPQARAIAAQLQ | |||||||||||||
5 | 4f4cA | 0.09 | 0.07 | 2.63 | 0.76 | CNFpred | NNRLRREFVKSILRQEISWFDTNLATKLFDNLERVKEGTGDKIGMAFQYLFITGFIVAFTHSWQLTLVMLAVTPIQALGFAIAKSMSTFAIRETLRYAKVVEETISSIRTVVSLN--------------------GLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVH---------------GSLNFGDMLTTFSSVMMGSMALGLAGPQ--------------------LAVLGTAQG----------------AASGIYEVLD | |||||||||||||
6 | 2pffB | 0.11 | 0.10 | 3.77 | 0.99 | HHsearch-2 | AELVGKFEPSKVGQFDQV------LNLCLTEFENCYLEGN-DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSDELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTLNIL--EWLENP-SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLQGLVTAVASVRKAITVLFFIGVRCYEAYPEGVPMLSINLTQ----EQVQDYVNKTNSHLPAGKQVEISLVNGAVVSGPPQSLNLTLRKAKSGLDQSRIPFSEPFHVPA-SDLINKDL | |||||||||||||
7 | 5cwqA | 0.13 | 0.10 | 3.52 | 0.89 | Neff-PPAS | -------------------------EELERESEEAERRLQEARKRSEEARERGDLKELAEALIEEARAVQELARVACERGN-SEEAERASEKAQRVLEEARKVSEEAREQGD----------------------------------DEVLALALIAIALAVLALAEVACCRGNSEEAERASEKAQRVLEEARKVSEEAREQGDD-EVLALALIAIALAVLALAEVACCRGNKEEAERAYEDARRVEEEARKVKESAEEQGDSEVKRLAEEAEQLAREARRHVQECRG | |||||||||||||
8 | 6btmD | 0.07 | 0.03 | 1.43 | 0.55 | HHsearch | ------------------------------------------------------------------------SNKVIYAIYND--------------DDVLMNAVKKTRAA-HHHIEEVFTP-FPVHG--LDKAMGLAPTRLAIC--AFLYGCVGISVATTMMSYIGGPIMFEMTVFFAAHLMVITFYMRSRPKNPRTTDDHFLIEVAVND-N--EAE----LVSFFEGTGA-VEVKVIEK---------------------------------------------- | |||||||||||||
9 | 3i9wA | 0.10 | 0.08 | 3.12 | 0.69 | SP3 | -----------------------PTMNMARQLSEASAWELFAAQNLTSADNEKMWQAQGRMLTAQSLKINALLQALREQGFDTTAIEQQEQEISRSLRQQGELVGQRLQLR---QQQQQLSQQIVAAADEIARLA--QGQANNATTSAGATQAGIYDLIEQDQRQAAESALDRLIDIDLEYVNQMNELRLSALRVQQMVMNLGLEQ-IQKNAPTLEKQLNNAVKILQRR---------QIRIEDPGVRA-QVATTLTTVSQYSQDSEISNHLQTLAQNNIAQFAQFS | |||||||||||||
10 | 5cwmA | 0.12 | 0.10 | 3.41 | 0.91 | PROSPECTOR2 | D-----------------------PEDELKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTAEEAAREAKKVL---------EQAEKEGDPEVALRAVELVVRVAELLLRI----AKESGS-----------------EEALERALRVAEEAARLAKRVLELAEKQGDPEVALRAVE--LVVRVAELLLRIAKESGSEEA--------LERALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKRVAELLERIARESGSEEAKERAERVREEARELQERVKELR | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |