>PF11887 (252 residues) ETVVSVAEKVDPVKLNQTLTATAQALDGLGERFGQSIENGNTILADVNPQMPRIRQDNQR LADLADVYANASPDLFDALEHAVTTARTLNEQQGNIDAALMASVGFGNTGGEVFEKSGPY LVRGAADLVPTTALLDEYSPELFCTIRNYHDVEPKIASSLGGNGYSLRTHSEVLGAGNPY VYPDNLPRVNAKGGPEGRPGCWQPVTRDLWPQPYLVMDTGASIAPYNHLGLGQPIAIEYV WGRQIGENTINP |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | ETVVSVAEKVDPVKLNQTLTATAQALDGLGERFGQSIENGNTILADVNPQMPRIRQDNQRLADLADVYANASPDLFDALEHAVTTARTLNEQQGNIDAALMASVGFGNTGGEVFEKSGPYLVRGAADLVPTTALLDEYSPELFCTIRNYHDVEPKIASSLGGNGYSLRTHSEVLGAGNPYVYPDNLPRVNAKGGPEGRPGCWQPVTRDLWPQPYLVMDTGASIAPYNHLGLGQPIAIEYVWGRQIGENTINP | |||||||||||||||||||
1 | 5cwfA | 0.09 | 0.06 | 2.27 | 0.88 | SPARKS-K | ----------MSDEMKKVMEALKKAVENDDEVAREIERAAKEIVEALRENSDEMAKVMLALAKAVLLAAKNDEVAREIARAAAEIVEALRENNSD--EMAKVMLALAKAVLLAAKNNDEVAREIARAAAEIVEALRENNSD--EMAKKMLELAKRVLDAAKNNDDETAREIARQAAEEVEAD---------------------------------------------------------------------- | |||||||||||||
2 | 6ewyA | 0.15 | 0.09 | 3.09 | 0.93 | FFAS-3D | DTIAALIADV--AKANQRLQDLSDEVQAEQESVNKAMVDVETARDNAAAAEDDLEVSQRAVKDANAAIAAAQHRFDTFAAATVTAAKTLSASSQAVMANLQRARTERVNTESAARLAKQKADKAAADAKASQDAAVAALTETRRKFDEQREEVQRLAAER-------------------------------------------------------------------------------------------- | |||||||||||||
3 | 2ch7A | 0.09 | 0.06 | 2.10 | 0.35 | HHpred | ---------------------HMKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEISSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVISNSAKDVERVVESFQKGAEEITSFVETINAIAEQTNLAARGAGRGFAVVA--------------------------------------------------------------------------------- | |||||||||||||
4 | 5cwqA | 0.10 | 0.09 | 3.36 | 0.79 | MUSTER | EELERESEEA-ERRLQEARKRSEEAREGDLKELAEALIEEARAVQELA-RVACERGNSEEAERASEKAQRVLEEARKVSEEAREQDEVLALALIAIALAVLALAEVACCRSEEAERASEKAQRVLEEARKVSEEAREQGDVLALALIAIALAVLALAEVACCRGNKEEAERAYEDARRVEEEARKVKESAEEQGDSEVKRLAEEAEQLAREARRHVQECRGGWLEHHH------------------------ | |||||||||||||
5 | 2yfaA | 0.08 | 0.05 | 2.03 | 0.77 | CNFpred | KQQAYLATTFKSPENVKLLGELGDTISASLNKMRQGYDATRAARVSMDSSAIRADQAMDALSQEVM-QYQLISKARQQLLQVRIDVRGYIAENSNEQAALRQLDAALADTDNLKDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTVQGADIVKRSD------------------------------------------------------------------------------------------- | |||||||||||||
6 | 4k1pA1 | 0.11 | 0.07 | 2.58 | 0.43 | HHsearch-2 | ANVREWIDEYNPKRFNSYLYELAGNINEDEQSKADFTNAYGKLQLQVQSIQENMEQDLLELNRFKTVLDKDSNNLSIKADEAIK---TLQGSEDQVSSFTELIDRQITTLETLLTVLNNNMIQIQKNVEEDSSLLQKHFNQIKKVSDEMNKQTNQFEDYVTN-V-EVH------------------------------------------------------------------------------------ | |||||||||||||
7 | 2yfaA | 0.08 | 0.06 | 2.24 | 0.89 | Neff-PPAS | KQQAYLATTFKSPENVKLLGELGDTISASLNKMRQGYDATRAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQYQLISKARQQLLQVRIDVRGYIANSSANEQAALRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTVQGADIVKRSDAYQIQLER------------------------------------------------------------------ | |||||||||||||
8 | 1qu7A | 0.10 | 0.06 | 2.23 | 0.65 | HHsearch | ENARQASHLALVDNVVQTMRDISTSSQGQGRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVA----EMDRVTQQN-------AALVEQSAAAAAALEEQASRLTEAVAV--FRIQQQ---------------------------------------------------------------------------------- | |||||||||||||
9 | 6gaoA | 0.09 | 0.08 | 2.90 | 0.74 | SP3 | -HMEEIKKQ--VQVNVDDIRAANIKL----DGLGRQIADISNSISTIESRLGEMDNRLVGISSQVTQLSNSVSQNTQSISSLGDRINAVEPRVDSLDTVTSNLTGRTSTLEADVGSLRTELAALTTRVTTEVTRLDGLINSGQNSIGELSTRLSNVETSMVTTAGKNGNTLNVIVGNGMWFNSSNQLQLDLSGQSKGVGF-VGTGMVVKIDTNYFAYNSNGEITLVS------------------------- | |||||||||||||
10 | 4cgkA | 0.08 | 0.08 | 3.00 | 1.04 | PROSPECTOR2 | SNVDQIQEQVSASNLQAENDRLQAESKKLEGEITELSKNIVSRNQSLEKRVAAMSEIVSANNKMLEQQKADKKAISEKQVANNDAINTVIANQQKLADDAQALTTKQAELKAAELSLAAEKEGEKASLLEQKAAAEAEARAAAVAEAAYKEKRASQQQSVLASAN---------TNLTAQVQAVSESAAAPVRAKVRPTYSTNASSYPIGECTWGVKTLAPWAGDYWGNGAQWATSAAAAGFRTGSTPQVAD | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |