>PF11886 (265 residues) VPVPMPDLALPASFDSDNPTHRYRSLDSSNPWLVRPVLDTHGWDHDVGYEGINVERLFVA KKKFPISFSGQVTKDKRDANVQMELASSLKHGEGKATSVGFDMQTVGKDLAYTLRSETRF SNLKKNKATAGISVTLLGDALSAGVKFEDKLIANKQFQVVMTGGAMTGRGDLAYGGSLEA QLRDKDYPLGCSLSTLGLSIMDWHGDLAIGCNIQSQVPVGRSTNLIARANLNNKGAGQVS LRINSSEQLQVALIAVLPLLKKLFE |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | VPVPMPDLALPASFDSDNPTHRYRSLDSSNPWLVRPVLDTHGWDHDVGYEGINVERLFVAKKKFPISFSGQVTKDKRDANVQMELASSLKHGEGKATSVGFDMQTVGKDLAYTLRSETRFSNLKKNKATAGISVTLLGDALSAGVKFEDKLIANKQFQVVMTGGAMTGRGDLAYGGSLEAQLRDKDYPLGCSLSTLGLSIMDWHGDLAIGCNIQSQVPVGRSTNLIARANLNNKGAGQVSLRINSSEQLQVALIAVLPLLKKLFE | |||||||||||||||||||
1 | 2yfnA | 0.10 | 0.07 | 2.49 | 1.20 | CNFpred | -----------------------------------------------------------------QTLEIVLADE--NAQVEVHLLYGVLEE-NDVITRSVRIKNTGGQITIEKAAAACLDFV-----QGEFDVLRFYG-AMERNLERTPLGH-GTIAFGSRRGTSSHQ------YNPAVILAEKGTTET-AGSCYGMLFV-------YSGNFSCEAEKDQFNQTRLLLGLNE-TVPEVILSYSA-EGLSALSQQYHNCIRNHVC | |||||||||||||
2 | 4es8A | 0.10 | 0.09 | 3.48 | 1.02 | PROSPECTOR2 | EELPDDLMNFKGTWEVSADGSRFFSKGATDSYVFHLIVKKPGWREHNEVKDSYIKIAARYKTSTTVAFKVNTKSLIKDHDYKITFEQGQIASG---ITVDYRIGSAFNKYASNVKIEGEEQGFKQREQGDKTISFRTLKEGPMSLVLLSKVKPQGDLDVEFKNLKIIDVTNVAYVGNKNVQLTLKSDDGRTNFEGDEISLFNSRGELLQTVTVTKDQQLKNKEKLKVSIKQKQSKDFFFEVGIDPKVE---------------AK | |||||||||||||
3 | 4es8A | 0.11 | 0.11 | 3.80 | 0.86 | SPARKS-K | EELPDDLMNFKGTWEADGSSGRFFSKGATDSYVFHLIPKPGWREHN---------------EVKDSYIKIIAARYKTSTTAPYSVAFKVNTKSDHDYKITFEQGQIASGITVDYRIGSAFNKTTDDSFYASNVKIEGEEQGFKQRKTISFRTLKEGPMSLVLLSKVEKKDLDVEFKNLKIIDVTNPSQVGNKNVQLTLKRTNFEGDEISLFNLQTVVTKDQQNPISITLSLKNKEKLKVSIKQKQSKKTSKDFFFEVGIDPKVEA | |||||||||||||
4 | 5o8oA | 0.11 | 0.09 | 3.40 | 0.80 | FFAS-3D | ------------AMGERLNPYAFAALYGTNQIFAQGNLDNEG--------ALSTRFNYRWGDRTITKTQFSIGGGQDMAQFEHEASLKAINPSFTGIFVGDYLQAVTPRLGLGLQAVWQRQGLTQGPDTASYFARYKAGDWVASAQLQA----QGALNTSF---WKKLTDRVQAGVDMTLSVAPSQMGGLTKEGITTFGAKYDFRMSTFRAQIDSKGKLSAPVTLTFAADVDHVTQGSVSIEASDVDLQEQQ------------- | |||||||||||||
5 | 6h3iF | 0.07 | 0.05 | 2.02 | 0.27 | HHpred | ------------------------------------QWNPAKYAFAEDAQGLSISYT----PYLT------------DIS--L-GQVTYYNKINDRSAFAGSFRYFGG-IELR---E-PTREVNPNEFALDG---------SYSLKLSETFSMAVAARYIRS--NLKVSAAGSFAVDVAGFYQSEEIAYSNGRWRAGFNIQNLGPKISYDHDDLSANFLPANLRVGGGFDFIFDDKLGVSLELTKLDEANYKKY----------- | |||||||||||||
6 | 4es8A | 0.14 | 0.13 | 4.51 | 0.74 | MUSTER | LPDDLMNFKGTWEVSADGSSGRFFSKGATDSYVFHLIVKKPGW-HNEVKDSIAARYKTSTTAPYSVAFKVNTKSLIKDHDYKITFEQGQIASG---ITVDYRIGSAFNKYASNVKIEGEEQGFKQREGDKTISFRTLKEGLVLLSKVEDLDVEFKNLKIIDVTNPSQLDKGVAYNKNVQLTLKSDDG--RTNFEGDEISLFNSRGELLQTVTVTK----DQQNPISITLSLKNKEKLKVSIKQKQSKKTS----FFFEVGIDPKV | |||||||||||||
7 | 4fnrA | 0.10 | 0.06 | 2.40 | 1.15 | CNFpred | ----------------------------------------------------------------AETLEIVLGDA--LIGLEVTLQYTAYEK-WNVITRSARFENKGGERLKLLRALSMSVDFP--TADYDWIHLPGA--GRERWIERRPLVT-GVQAAESRRGASSH------QQNPFIALVAKNADEH-QGEVYGFSFVY-SGNFLAQIEVDQ------FGTARVSMGINP-QTPEVVMVYSD-QGLNGMSQTYHELYRTRLA | |||||||||||||
8 | 5mu1A6 | 0.14 | 0.07 | 2.43 | 0.42 | HHsearch-2 | HAEVARSDLPQGIFDN-APTVRFKQWNSTYTIFFVAVINPASEIGQ---RWVAVL--KVLSELEGVHLRVFLNPTKRFYRYVLSSSPSFTGPRETLLVVGMDVPPAW--LVTSKVAVDDLDNLRIKDIKAHVEAIYELEH----------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 4es8A | 0.09 | 0.09 | 3.29 | 0.89 | Neff-PPAS | LPDDLMNFKGTWEVSADGSSGRFFSKGATDSYVFHLIPAKDVKKPGWREHNEVKDSYIKIDKQ---SIAARYKTSTTAPYSVAFKVNTKSLIKDHDYKITFEQGQIASGITVDYRIGSAFNKTTDDS-----FKISDESKYASNVKIEGEEQGFKQREQGDKTISFRTLKEGPMSLVLLSKVEKK----PQGDLDVEFKNLKII-DVTNPSQLDKGVAYVGNKNVQLTLKSDDGRLQTVTVTKDQQNPISITLS--EDQAKSLKN | |||||||||||||
10 | 1vt4I3 | 0.18 | 0.09 | 2.94 | 0.90 | HHsearch | YASIVDHYNIPKTFDSDDPPYLDQYFY----------------SHIHHLK--NIEHRMTLFRMVFLDFRFLEQKIRHDST--------------AWNASGSILNTLQQLKFYKPYICDNDPKYERLV------NAILDF----LPKIEENLICSK--------------------------------------------------------------------------------------------YTDLLRIALMAEDEAIF- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |