>PF11817 (268 residues) RFNHARLLADSLAIRIIRCLLWAGQTAAAVRSWVSHRDRTQDIVNRRGKGSRNYGWEAWE SRWSMVMAELIRRAEISPQEQYLAPASHEKPTFTGDGLYPWEQLHHEGYWLYRSAKHAIK RRALAQQIPDEDRPPPGQSPASQIASKSYLYDTYLAPETHVEAPLSGSKGFDHSSLILNT LKAALEEFAKRNQTRKVESLSLEMAEEYVRIGSWSDGLNLLRPLWSTLSWRGSGWWPLME RFGLALRECALQIGDGEMVVRIDWELLS |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | RFNHARLLADSLAIRIIRCLLWAGQTAAAVRSWVSHRDRTQDIVNRRGKGSRNYGWEAWESRWSMVMAELIRRAEISPQEQYLAPASHEKPTFTGDGLYPWEQLHHEGYWLYRSAKHAIKRRALAQQIPDEDRPPPGQSPASQIASKSYLYDTYLAPETHVEAPLSGSKGFDHSSLILNTLKAALEEFAKRNQTRKVESLSLEMAEEYVRIGSWSDGLNLLRPLWSTLSWRGSGWWPLMERFGLALRECALQIGDGEMVVRIDWELLS | |||||||||||||||||||
1 | 3sf4A | 0.12 | 0.10 | 3.66 | 1.21 | FFAS-3D | -HHHDLTLARKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELKGKSFGGEFPEEVRDALQAAVDFYEENLSLV-----------------TALGDRAAQGRAFGNLGNTHYDAVIAHEQRLLIAKEF---------GDKAAERRAYSNLGNAYI--------------FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI--AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE | |||||||||||||
2 | 4a1sA | 0.09 | 0.07 | 2.66 | 1.07 | CNFpred | ------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN-----------DRLGEAKSSGNLGNTLKVMGRFDEAAI--------------CCERHLTLASEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV----------------------------------EALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA | |||||||||||||
3 | 4a1sA | 0.09 | 0.08 | 3.12 | 1.05 | Neff-PPAS | -----LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-----------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRN--------PGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE--REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA | |||||||||||||
4 | 1hz4a | 0.12 | 0.12 | 4.19 | 1.00 | PROSPECTOR2 | NPDEAERLAKVATSVLGEVLHCKGELTRSLALMQQTEQMARQ----HDVWHYALWSLIQQSEILFAQWETQEKAFQLINEQHLEQLPMHEFIEVLSSYQPQQQLQ---CLAMLIQCSLARGRSQLNRLENLLGNGKYHSDWISNANKVNWLRHTAKPEFANNHFLQGQWLLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL--ANRTGFISHFGEAMAQQLRQLIQLNTEQHRAQRILREIN | |||||||||||||
5 | 3ulqA | 0.08 | 0.07 | 2.81 | 0.97 | SPARKS-K | -------SSSSIGEKINEWYMYIRRFSI--PDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQA--RLTGLLEYYFNFFRGMYELDSAIKFFKKAES----------KLIFVKDRIEKAEFFFKMSESYYYMKQ------TYFSMDYARQAYEIYKEHEYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ--PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA | |||||||||||||
6 | 4a1sA | 0.12 | 0.11 | 3.81 | 1.19 | FFAS-3D | DYNKAQYHKHDLTLNLGNTLKVMGRFDEAAICCERHLTLARQL----GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVRDLGDRGAQGRACGNLGNTYYAAIEHHQERLRIAREF---------GDRAAERRANSNLGNSHI--------------FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI--AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ | |||||||||||||
7 | 5o09C | 0.11 | 0.08 | 2.96 | 0.43 | HHpred | -VEEARRLVEQI-SVLADLRQKEGDFRKAESLYREALFRAQELRK--QDPD----L---LTGIYSLLAHLYDRWG----------------------------------RMDKAAEFYELALKISAENGLEE---SDKVATI-----KNNLAM----------IFK---QLRKFERAEGYYCEALETFQRLDGSARVASVYNNLGVLYYSHMDVDRAQVMHERA--LAIRQNQMDPADLSQTFINLGAVYKAAGDFQKAEACVDRAKR | |||||||||||||
8 | 4a1sA | 0.11 | 0.10 | 3.53 | 0.97 | MUSTER | KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL----SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTKLMRDLGDRGAQGRACGNLGNTYYLLGD-FQAAIEHHQERLRIAREFGDRAAERRANSN------------GNSHIFLGQ-----FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD--RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ | |||||||||||||
9 | 5a7dB | 0.09 | 0.07 | 2.67 | 1.07 | CNFpred | ------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN-----------DRLGEAKSSGNLGNTLKVMGRFDEAAI--------------CCERHLTLASEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE---------------------------------ALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA | |||||||||||||
10 | 6gmhQ | 0.12 | 0.11 | 3.97 | 0.47 | HHsearch-2 | DYDQAFQFASLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETSEDQDIADDVEAW-----IELAQILEQTDIQGLSAYGTATRILQE-KVQA-DVPPEILNNVGALHFRLGNLGEAKKYFLASLDRAKAEAHDEHAINILREHPNYVDCYLDKGNFYEAKILKQTQSDTYSMLKRHQDRALAIYKQVRNDAKNLYAANGIGAVLAHKGYFREARDVFAQV--REATA-D-----ISDVWLNLAHIYVEQKQYISAVQMYENCLR | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |