>PF11692 (271 residues) LQLPCTIFQTQHRMNDYGARDMRCGDLTAEQLKRQFHLEKISIQVDPYTLKKLRSSSPLQ YALDDFYRNEETITAEQCARLLFDEFRRESHAFAFYGPYRHLIIGMINHMQYGNGAPFKR PLLDTATREQILHNTTSNSSLLNIQATLKNNIDWKQAIYHEEKKWMLTKAVKDSRLPKFT HLKHYINGLGISVHDTWSTCITLEDLAVHKNTYYATLHYRIQDHFGLDEADISGPILSRL AIFRIWFVLQHYQRFGFKPYITSMDAKLEIS |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | LQLPCTIFQTQHRMNDYGARDMRCGDLTAEQLKRQFHLEKISIQVDPYTLKKLRSSSPLQYALDDFYRNEETITAEQCARLLFDEFRRESHAFAFYGPYRHLIIGMINHMQYGNGAPFKRPLLDTATREQILHNTTSNSSLLNIQATLKNNIDWKQAIYHEEKKWMLTKAVKDSRLPKFTHLKHYINGLGISVHDTWSTCITLEDLAVHKNTYYATLHYRIQDHFGLDEADISGPILSRLAIFRIWFVLQHYQRFGFKPYITSMDAKLEIS | |||||||||||||||||||
1 | 4fyeA | 0.10 | 0.09 | 3.28 | 0.64 | SPARKS-K | ------------------------ITENIETYVTHLDLEPVPQHLAYFKDPMLDGKQVVVVNSQYDKHGRPVTDVIQEANNYIDNLVAAAKSLIDKDLRKNAIDEMAKTFKKSKADLFSSKK-SSANKDFLEQLAKVEGSLQQFTQAVAKASGHK----LKALDKEGHNIRSHNRRFKAPNSKEGEEQFIMYIPGNSSMARMIAGTRHSDG--TVTIHHDSFSGPGMPYSDFKGADDYKKLAIKAVTLINQEEVIQTLAQRQIDRMTNEDL | |||||||||||||
2 | 6d2qA | 0.11 | 0.10 | 3.44 | 0.69 | FFAS-3D | -QISIRVQMLDDTQQRAPGKAL------FDLVCSHLNLVEGDVWLDLLKPILKQIRRPKNIILRFFPPDHTQLLEELTRYLFALQIKHDLAC----GRLESSAALLVAHIVQSEIGDFDEVQCKQHLLNNKYIPE-----QDTLMDKIIGYHRKHVGQTPAESDYQLLEIA--RRLEMYGVRLHAHSGVLVFQGHTKINAFNVRKLSFKRKRFLIKLRCQDTLEFMMGSRDCCK---------VFWKICVEYHAF-FR------------- | |||||||||||||
3 | 2pffB | 0.13 | 0.10 | 3.58 | 0.37 | HHpred | -------------MDAYSPLTLSHGSLEHSQLQEQFNKI----------------LPEPTEGFAA---DDEPTTPAELVGKFLGYVSSLV-EPSKVGQFDQVLNLCLTEFEN-CYL-EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR-PFDKAYFEELRDLYQVGDLIKFSATLDFTQGLNILENTPDKDY--LLSIPISLIGVIQLAHYVVTKLLGFTPGELRSYLKHSQGLVTAVAIAET-------------------- | |||||||||||||
4 | 6d4hA | 0.09 | 0.08 | 3.23 | 0.67 | MUSTER | MFNPQLMIQTPKE----EGANV----LTTEALLQHLDSALQASRVHVYMYNRQWKLEHLCYKSGELITETGYMDQIIEYLYLIITPLDCFWEGAKLQSGTAYLLGKPPLRWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNSTKPLDMALVLNGGCHGLSRKYM-----HWQEELIVGGTVKNSTGKLLQTMFQLMTPKQMHFKGYEYVSHINWNEDKAAAILEAWQR-QSVA---NSTQKVLSF | |||||||||||||
5 | 5nczA | 0.09 | 0.07 | 2.66 | 0.71 | CNFpred | --------------------------LTDDELFQY-----LLQLVQVLKYESY-----LDCELTKFL-----LGRALANRKIGHFLFWHLRSEMHVPSVALRFGLIMEAYCRG------STHHMKVLMKQGEA----LSKLKALNDFVKVSSQKT---TKPQTKEMMHMCMRQETYMEALSHLQSPLDPSTLLEEVCV-KPLWIMYSSEEAGSAGNVGIIFKNGDDLRQDM------LTLQMIQLMDVLWKQEGLDLR-GCLPTGDRTGLI | |||||||||||||
6 | 5swiB2 | 0.19 | 0.06 | 2.03 | 0.51 | HHsearch-2 | -------------------------------------------------------------------------------NGFWDTFRTTFPLFALIEHYQRFLEGFLNSYRDTGFPKWLAPD------ERGMMPGT--LLDGIIADSACKDMT----PDLEGLFQAMLETA--SKADP-----LGING----------------------------------------------------------------------------------- | |||||||||||||
7 | 5hamA | 0.09 | 0.07 | 2.55 | 0.70 | Neff-PPAS | --------------------------YTENEITHLLTAQLDEKKFSVQPAITFRNTALTEEMLKDYTAK------GEEKNKILAEVQETIKIANLIPDKEERALMLGDAKKREEILKLSDAEREKLKNDLLRGGEAQQQINEDILNRATKDIKDNGK-----------------------------EAAVIPIEMGYGHWTVLVAKYDKKDN---QIILTFNDSLGNDEQTKQQTDQSACGVFTVDNGIKIAKG---QAILSTEESKGEKG | |||||||||||||
8 | 1vt4I3 | 0.07 | 0.06 | 2.39 | 0.71 | HHsearch | ----------------------EY-ALH-RSIVDHYNIPDSDDLIPPYLDQY----------FYSH------IGHH---LKNIEHPERMTLFRMVFLD----FRFLEQKIRHDSTASGSTLQQLKFYKPYDNDPKYE-RLVNAILDFLPKIEENICSKYTDLLRAIFEEAHKQVQRGGGGGGGGGGGGGGGGGGGGGGGGGG-GG-GGGGGGGGGGGGGGGGGGGGGGGG--GGGGGGGGGGGGGGG--GGGGGGGGGGGGGGGGGGGGG- | |||||||||||||
9 | 1xfyO | 0.12 | 0.06 | 2.21 | 0.61 | SP3 | -------------------------QLTIAEFKEAFSLFDKDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFKDGNG------YISAAELRHVMTNLGEKLTDEEVDQMIREADIDGDGQVN---YEEFVQMMTAK------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 5hamA | 0.08 | 0.06 | 2.47 | 0.80 | PROSPECTOR2 | DYW-------------YTENEI------THLLTAQLDEKKFSV----QPAITFRNTALTEEMLKDYTAK------GEEKNKILAEVQETIKIANLIPDKEERALMLGDAKKREEILKLSDAEREKLKNDLLRGGEAQQQINEDILNRATKDIKDNGK-----------------------------EAAVIPIEMGYGHWTVLVAKYDKKDN---QIILTFNDSLGNSINYDGQKLPKLIDVFTVDNGIKIAKGQAIDAMFKQDAQWIRQQ | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |