>PF11296 (258 residues) WKRSAPVPEVPAEPDLVVEEVASGFCGAVIRCEKTAQGPTVTLEDRFGKHRVFPMEPRGF LLEGKVVTLVRPSAGGPARPTRTASGSVAVPGARARVARAGRIYVEGRHDAELVERVWGD DLRIEGVVVEYLEGVDDLPAIVAEFAPGPDARLGVLVDHLVPGSKESRIAAEVTGDHVLV VGHPYIDVWEAVKPSSVGIDAWPVVPRGQDWKTGVCRALGWPENTGAAWQRILSTVRSYK DLEPQLLGRVEELIDFVT |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | WKRSAPVPEVPAEPDLVVEEVASGFCGAVIRCEKTAQGPTVTLEDRFGKHRVFPMEPRGFLLEGKVVTLVRPSAGGPARPTRTASGSVAVPGARARVARAGRIYVEGRHDAELVERVWGDDLRIEGVVVEYLEGVDDLPAIVAEFAPGPDARLGVLVDHLVPGSKESRIAAEVTGDHVLVVGHPYIDVWEAVKPSSVGIDAWPVVPRGQDWKTGVCRALGWPENTGAAWQRILSTVRSYKDLEPQLLGRVEELIDFVT | |||||||||||||||||||
1 | 3tvaA | 0.16 | 0.13 | 4.36 | 0.61 | SPARKS-K | ----------------------PYWPIGVFTSVDAGLGPTVQVHAPHPHTRTI-----------QVTVIFGGFDGESYADIPTTTVGLVPLETRASWVGCPAIGLHGFVDYSELVRVTQDLLTHAAVHLETGQEADHLLEFIEDVNRP---NLGINFDNILGTGNPIEALRKVARRSIHCK------DALWAPVNERGKSWGQEVALGTDVGEAYLTTLWIPHDPVQQKKDLASALELLTGLRKKIANC--------- | |||||||||||||
2 | 5xsoA1 | 0.19 | 0.09 | 2.88 | 0.49 | FFAS-3D | --------------------------------------------------------------------------------------------------TKGHIYV--IDDDAAMRDSLNFLLDSAGFGVTLFDDAQAFLDALPGLSFG-----CVVSDVRMPGLDGIELLKRMKAQQLIMTGH--GDVPLAVEAMKLGAVDFLEKPFEDD-------------RLTAMIESAIRQAEPAAK----------------- | |||||||||||||
3 | 2p62A | 0.13 | 0.07 | 2.30 | 0.55 | HHpred | -------------------------------------------------------------------------------------------------MRIKLIIVEGKTDESFFKVLLGFIGENIALVIIHAEGKQRIPKVLKSVGLLNVEEVYVVRDVDEG---NDVFLSFLRE-----REVRVDNAIV-TEGVKIYPYGMGNLTLFVKE-KKELELSLAYL-AKLD--GILEKYRGSMRALSQ------------- | |||||||||||||
4 | 4rdyA | 0.11 | 0.11 | 3.89 | 0.59 | MUSTER | PHLYNEDEELKRAIDAVNAAKKYGVKTIIDLTVAGIGCDVRFNEKATGV-NIIMG--TGFYTYTEIPFYFKNRGIDSLVDAFVHDITIGIQGTNTRAAFVAVIDGLTKDVEMAIRAAAKTDVPIITHSFVGNKSSLDLIRIFKEEGVDLAR---TVIGHVGDTDDISFIEQILREGAFIGLRFGLDIYLPLDKRVKTGWIDYCPTIDWYP--PEVVRSTVPDWTMTLIFEKVIPRMRTEEQINRVLIDNPRRLFTG-- | |||||||||||||
5 | 4ijmA | 0.09 | 0.07 | 2.62 | 0.72 | CNFpred | -------------------------SDNVVILRNVLRRRTLEILKLR--GTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEGFFKDSIILATGA-KTLLVSRFVENACKERAILFAYEESRAQLLRNAYSWGMD-QNLLKIVCAYAGLEDHLQIIKSEINKPARIAIDS-----------------------------LSALARGVSNNAFRQFVIGVTGYAKQE---------EITGLFTNTS | |||||||||||||
6 | 2p62A1 | 0.15 | 0.05 | 1.83 | 0.76 | HHsearch-2 | -------------------------------------------------------------------------------------------------MRIKLIIVEGKTDESFFKVLLEKGFPNIALVIIHAEGKQRIPKVLKSVLLLNVEEVYVVRDVDEGNDVFEWVLSFLRDNGAIVTEGVKIYPYGM------------------------------------------------------------------- | |||||||||||||
7 | 4if2A | 0.10 | 0.10 | 3.60 | 0.77 | Neff-PPAS | YPEAWGDEDKRVAIARLGELKARGVDTIVDLTVIGLGRYIPRIARVAAATELNIVVATGLYTYNDVPFYFHYLGPGAQLDGPEIMTDMFVRGIADTGIKAGILCATDEPGRAVAQAHKRTGAPISTHTHAGLRRGLDQQRIFAEEGVDLSR---VVIGHCG-DSTDVGYLEELIAAGSYLGMDRFGVDVISPFQDRVNIACCYFDALPEELVPVAMPNWHYLHIHNDVIPALKQHGVTDEQLHTMLVDNPRRIFERQG | |||||||||||||
8 | 2p62A1 | 0.16 | 0.06 | 1.93 | 0.69 | HHsearch | -------------------------------------------------------------------------------------------------MRIKLIIVEGKTDESFFKVLLGFRFPNIALVIIHAEGKQRIPKVLKSVLLLNVEEVYVVRDVDEGNDVFEWVLSFLRDNGAIVTEGVKIYPYGM------------------------------------------------------------------- | |||||||||||||
9 | 1q57A1 | 0.13 | 0.10 | 3.38 | 0.65 | SP3 | TYNVWNFGESNGARGITCQKAG-------YWIAKVDGVMVADYRDQNGNIVSQKVRDK----DKNFKTTGSHKSDALFGKHL---------WNGGKK----IVVTEGEIDMLTVMELQDCKYP----VVSLGHGASAAKKTCAANYEYFDQQIILMFDMDEAGKAVEEAAQVLPAGKVRVAVLPCKDANECHL-----------------------------NGHDREIMEQVWGVVSALSLRERIREHLSSE----- | |||||||||||||
10 | 6ef6A | 0.15 | 0.13 | 4.42 | 0.82 | PROSPECTOR2 | YDVSDNASLRLLNLSELVEDGEHQS---ILRVHRQDYHQPHEIERDGRRVVTVDPADVPRHVGGAEPDEESLTLDDWTRPAGFGRFSWDWEHCLGDTPRWGRWQDAEGVGASETALLT--------------RAQDLLHRKLEEYGSGPDRYGLILVDSSTPQ-----------RTITVGFGWYFYDFGTA-------VSFIEHDPRLGEWQESWVAGYRRELPAADAWMGSHTHSRESATKAISYAAGSCALAERLT | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |